Protein Info for Psyr_2157 in Pseudomonas syringae pv. syringae B728a

Annotation: Inosine/uridine-preferring nucleoside hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF01156: IU_nuc_hydro" amino acids 33 to 331 (299 residues), 315.8 bits, see alignment E=1.9e-98

Best Hits

Swiss-Prot: 41% identical to RIHA_KLEP7: Pyrimidine-specific ribonucleoside hydrolase RihA (rihA) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

KEGG orthology group: K01239, purine nucleosidase [EC: 3.2.2.1] (inferred from 100% identity to psb:Psyr_2157)

Predicted SEED Role

"Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)" in subsystem Purine conversions or Queuosine-Archaeosine Biosynthesis (EC 3.2.2.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUH2 at UniProt or InterPro

Protein Sequence (341 amino acids)

>Psyr_2157 Inosine/uridine-preferring nucleoside hydrolase (Pseudomonas syringae pv. syringae B728a)
MTLIQFSRQFIRGALLLSILGTAAVQAAEKRDLIIDTDPGADDVVALLLALASPEELNVM
AITTVAGNVRLDKTSRNARLAREWAGREEVPVYAGAPKPLVRTPIYAENVHGQEGLPGVP
VHEPAKGLAEGNAVDYLIRTLSKAKPHSITIAMLGPQTNLALALVQAPEITQGIKEVVVM
GGAHFNGGNITPVAEFNLFADPHAAQIVLASGVKLTYVPLDVTHKILTSEQRLKQIAALG
NNAGKLVDGILNEYVKLDMEHYGLPGGPVHDASVIAWLLKPELFSGRQINVTVDTREGIG
FGQTVADWYGTLKQPQNVFWVENGDAQGFFDLLTERLARLK