Protein Info for Psyr_2129 in Pseudomonas syringae pv. syringae B728a

Annotation: Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 31 to 47 (17 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 100 to 127 (28 residues), see Phobius details amino acids 177 to 202 (26 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 287 to 310 (24 residues), see Phobius details amino acids 321 to 339 (19 residues), see Phobius details amino acids 345 to 369 (25 residues), see Phobius details amino acids 381 to 405 (25 residues), see Phobius details amino acids 412 to 432 (21 residues), see Phobius details PF07690: MFS_1" amino acids 38 to 395 (358 residues), 171.9 bits, see alignment E=9.3e-55

Best Hits

KEGG orthology group: K08191, MFS transporter, ACS family, hexuronate transporter (inferred from 100% identity to psb:Psyr_2129)

Predicted SEED Role

"Hexuronate transporter" in subsystem Alginate metabolism or D-Galacturonate and D-Glucuronate Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUK0 at UniProt or InterPro

Protein Sequence (442 amino acids)

>Psyr_2129 Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a)
MLNTQTNPVAQAARAGMGEKIRGALAVGKTRWGMLALVFFATTLNYIDRAALGVMQPILA
KEMSWTAMDYANINFWFQVGYAVGFVLQGRFIDKVGVKRAFFLAVLLWSLATGAHGLATS
AVGFMVCRFILGLTEAANYPACVKTTRLWFPAGERAVATGIFNAGTNVGAMLTPALLPVI
LTVWGWQAAFVAMGSLGLLWAITWRLKYYNPEEHPTVSKTELDYINQEVEPAPVKVPFTG
ILKMRGTWAFALAYAITAPVFWFYLYWLPPFLNQQYNLGISVTQMGVPLILIWLTADFGS
VGGGILSSWLIGRGMRATTARLLSMLIFAITICSVVFAANASGLWVAVLAISLAVGAHQA
WTANIWSLVMDYTPKHMMSTVFGFGGMCAAIGGMFMTQIVGAVLTATNNNYNVLFTMIPA
MYFIALIWMYFMAPRKVPTLSE