Protein Info for Psyr_2084 in Pseudomonas syringae pv. syringae B728a

Annotation: transcriptional regulator, GntR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF00392: GntR" amino acids 18 to 80 (63 residues), 58.9 bits, see alignment E=3.1e-20 PF07729: FCD" amino acids 90 to 216 (127 residues), 108 bits, see alignment E=4.6e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2084)

Predicted SEED Role

"Propionate catabolism operon transcriptional regulator of GntR family [predicted]" in subsystem Methylcitrate cycle or Propionate-CoA to Succinate Module

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUP5 at UniProt or InterPro

Protein Sequence (239 amino acids)

>Psyr_2084 transcriptional regulator, GntR family (Pseudomonas syringae pv. syringae B728a)
MLKMVEKTMTVADDSETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREA
IHRLEGQRLVVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMTQAEIDELRG
VLDTHERDAAFQAGIGYYQQEGDFDFHYRIIQGSGNRTLSQMLCGELYQLVRMYRIQYST
TPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASRRNIERHYQAASQTTSDRGKQ