Protein Info for Psyr_2066 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function DUF214:Fimbrial assembly

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 838 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 28 to 48 (21 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details amino acids 307 to 332 (26 residues), see Phobius details amino acids 351 to 377 (27 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details amino acids 421 to 444 (24 residues), see Phobius details amino acids 465 to 492 (28 residues), see Phobius details amino acids 714 to 735 (22 residues), see Phobius details amino acids 767 to 790 (24 residues), see Phobius details amino acids 802 to 822 (21 residues), see Phobius details PF02687: FtsX" amino acids 264 to 371 (108 residues), 39.7 bits, see alignment E=2.3e-14 amino acids 718 to 821 (104 residues), 30.6 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to psb:Psyr_2066)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUR3 at UniProt or InterPro

Protein Sequence (838 amino acids)

>Psyr_2066 Protein of unknown function DUF214:Fimbrial assembly (Pseudomonas syringae pv. syringae B728a)
MARLPFARLLSLAVRQLMRDARAGELRVLFFALLVAVAASTAIGYFGARLNGAMLLRATE
FLGADLILEGSSPARAEQVEEGKRLQLKHAQIVVFSSVIATDAGIQLSSIKAVDDAYPLR
GELKSAADLYQPEQAGSGPQPGEAWVEARLLPAVALKVGDDLDVGSKTLKLTRILTYEPD
RAGNFYSLTPRVMINLQDLAATGVVQPGSRVSYREMWSGPPEALAAYRKAIEPGLEPHQE
IKDARDGSQQIGGALGKAERYLNMASLVAVLLAGVAVALSASRFAARRFDASALLRCLGL
SRGETMTLFSLQLAIIGLLASLSGALLGWLAQLGLFALLQNLLPATVPPGGVLPALAGMG
TGLVALAGFALPPLAALGRVPPLRVLRRDMLPIPASSWLVYGAALLALGLIMWRLSLDLV
LTFALLGGGIVAALLLGSLLLLALNSLRRLLSGASLPWRLGLGQLLRYPLAAAGQSLAFG
LILLSMGLIALLRGELLDTWQNQLPKDAPNYFVLNVLPADKENFAQTLSKLSTHAAPLYP
VVPGRLTSINGEPVSNFVTKDSRGENATRRDLSLTWAAELPEGNTLTAGSWWKALPASAQ
SDATPGVSIEAKLADSLKIKLGDRLSFIVGGLTREAVVTSLRNVNWDTFQPNFFMIFQPG
TLADLPTTYLTSFYLPPGQDKQIVELSRAYPSISILGVEALLAQVRSILDQVTLAVQFVL
LFVLAAGIAVLFSGLQATLDERIRQGALLRALGAERALLIKSRRIEFGLLGAASGVLAAL
GCELVSFVLYRYAFSLEWQPHPWLLLLPVIGALLVGGAGVFGTRRALNVSPLTVLREG