Protein Info for Psyr_2040 in Pseudomonas syringae pv. syringae B728a

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1682 transmembrane" amino acids 1453 to 1477 (25 residues), see Phobius details amino acids 1497 to 1523 (27 residues), see Phobius details amino acids 1535 to 1554 (20 residues), see Phobius details PF05593: RHS_repeat" amino acids 812 to 848 (37 residues), 35.7 bits, see alignment (E = 4.4e-13) TIGR01643: YD repeat (two copies)" amino acids 812 to 848 (37 residues), 23.9 bits, see alignment (E = 4.4e-09) TIGR03696: RHS repeat-associated core domain" amino acids 1344 to 1423 (80 residues), 75.6 bits, see alignment 3.5e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2040)

Predicted SEED Role

"YD repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUT9 at UniProt or InterPro

Protein Sequence (1682 amino acids)

>Psyr_2040 YD repeat protein (Pseudomonas syringae pv. syringae B728a)
MAASTSVHSNALNFMSCLKSGVDPRTGLYNISISLPDLQSNDLRGPGFRLDLSYSQLNTL
DSGYGLGWNMQLSQYDPATQILSLSTGETFRVDGTSSNGQLTMTEKKLDTFHFYKLDDES
YRVAHKSGLVEILELHSSGNKRMAWPVKIIAPSGHSIALKHTVFNSSTYRLASITDDLGQ
TLLKIARSTTSVELDLHPDEGTGDTPLARFLMTLAGSDKRVSRITLPTENKASWRFEYGL
ENGNQLCVRHVETPAGSSENVYYQDEGHAFPSSAGRMPVPRVTKHVIDPGLNQAKIDVRY
TYKDGQQRSRNFLGAGLPIAWEDNGLDNLYKYLQDYNYVCTESLWVDNKAVRSIERTFNR
FHLQTLEVTTQNKNQLTVTTAYNILQGEHYSRQPNDCQLPSEITTRWQRLDAPERTRTET
VTDTYDSYGNLLVHTRADGIEEVSSWYPAAGGDGCPADAEGFVSRLKEKVVKPAPSSQLG
APTLATRYRYQTLPALADSELPDWIVPESETLLQLESDGTCVELQKVLLEYINQPDAPFL
HGRTGKNIESLNGNDTVTVYEYSKSKSRQLEVPVQLIDITTIGFDNARISKQQQQSLLTG
QVLLTLEEGVEIRYVYDVLNRLTKETIAPDSSDEASREYLYTLCSAAGQQAEQVLVDARK
VKTRSVLDGLGRAILEERDHIDSNDLQAMRIIHTAQYNAWNNVQHETDYDWFANQQRFAT
RNTYAYDDWNVQCVITSDHGVQTHQYYDPIGNEEHKGPVQKTWVQSSDAEPLISGRSETW
LNMFGKPDKIKIKIKTQNADGEKDQGSQTFLYDGLGRCTEQTDASNHTTLFSYDAWSRMV
TTRLPDGSEAHRDYAPHSNTELPIGLKMMHSDGITNTLAGKQAFDGLGRLTLSQAGQRIE
QYEYEDGHRQVKTRKTAKGDDISYTYNLALTDQIVSSTAPDDTVGFGYDNVSARLTSATN
QQGKRVYAYDAHNQLTKETWKDLQGRTWKTVHRTSLQGRAMYRTDVEQKDVKNSVKGVVK
GRIKGGVKGVETIYRYDDFGRLENVVQGNVEVTILYDTLGQPSEMTTCDQAAGTRLVNRM
KYDDQGQEILRTQIAGNHPVRTLEQQWQTDGLMQSRHLQEAGNTLLLETFKYDARGRLTG
VIYSGSTLPVHASGRAILKQTFIFDSLDNMIQTTTEFADASTEMAFFHYGKEDDPDPLSR
DRCQLLGITYRPPRGTPDPTFRYDANGNQLDDEHGNRLYYDSQSRLLRVEKPAGEPISTY
AYDGHDHLATTRNGSDSEILRFYQDQQLSSTVQDDRRTQFLYIDEQPVGQQTIGEPAETL
LLLTDANQSVLAEFQQDKLRTAVYSAYGERHSDDALLSVAGFNGEICEKDTGWYLLGNGY
RAYNPGMMRFHSPDSLSPFGAGGVNPYTYCLGNPIAWRDPTGHDASSQSGRLRRPDEDAI
PAEMPGGMGIQTWIMLAVGIVFTAVGAYATVASFGLAAPGSVPVTVLGMTMTAQTAAYVA
TGLLAAGTVLGAASTAATTYGAVKGNETAFRLGEYLAYAAIPLDIAGGVFRSAVKSAIKA
ASKASSRRVSETASRVSVGTIDDSPVDSVTGTRRGSAPASMDAPGPVGGVRIPRVRVNRP
EPPTPNPRPESGPFARRARTPTDDPAAAPSSGPSRFAGRTVFLVRLRKLGENVFVLKYMP
RR