Protein Info for Psyr_1957 in Pseudomonas syringae pv. syringae B728a

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1136 transmembrane" amino acids 294 to 305 (12 residues), see Phobius details PF00668: Condensation" amino acids 52 to 504 (453 residues), 353.9 bits, see alignment E=2.7e-109 PF00501: AMP-binding" amino acids 522 to 881 (360 residues), 273.6 bits, see alignment E=4.9e-85 TIGR01733: amino acid adenylation domain" amino acids 547 to 954 (408 residues), 425.5 bits, see alignment E=9.8e-132 PF13193: AMP-binding_C" amino acids 938 to 1018 (81 residues), 41 bits, see alignment 6.2e-14 PF00550: PP-binding" amino acids 1047 to 1106 (60 residues), 53.2 bits, see alignment 5.9e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1957)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZV22 at UniProt or InterPro

Protein Sequence (1136 amino acids)

>Psyr_1957 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a)
MNPEHAQKLARRFVELPLEKRRLFLDGMRKENMDFSLFPIPSCAGLAERDGLSYAQQRMW
FLWQLDPHSAAYNLPMSVCLNGPLELPLLERAFSALVERHESLRTTFGQEGDRAFQRVAP
PAPASIRLTDLSALPPEQRWASARQAMAEQAAQTFDLQRGPLFTVQVLRLAEQEHLLLLN
LHHMITDGWSMNVLIDEWLRGYDALLAGKPLPFQPLLVQYRDYAVWQRSWLEAGEQERQL
DYWRSHLGEEHPLLELPTDRPYPALPSHDGARLELALEPELLRDLKSLAQRQGVTLFVVL
LAAFKSLLHRYSGQTDIRVGGLIANRTRSETEGLIGCFINTQVLRSEVTAQTRFVDLLNI
VRDASTGAQAHQELPFDAIIDALQPERSQSHNPLFQVMFNHQPVVADLLDKQLSGGLRVA
NLPAGQQALAQRSHAAASDLMLATSGEGEQLHAAFTYATDIFDESTIARLAGHWRNLLAS
VCADPLQTIAELSMLSADERTQLLDVDNATKADTTTPAHRQFEAQVQRTPDALALILARE
GQSPSLSYTELNQRSNRLAWQLREQGVGADVLVGVALGRSLDMPVALLAVLKAGGAYVPL
DLNAPSERLRHVVEDSGVKLLLTHSDQLTGLPELADIQCLCIDRMNSETASVQNLDGPID
PASLAYVIYTSGSTGRPKGVAISHAALAEFVTLGADYSDLHEGDRVLQFATHSFDGFVEQ
FYPPLCRGAAVVLRDERLWDSATFHQAIVEHGVTLADLPAAYWLTLVQDFAASPPVHYGA
LRQVHVGGEAMAVEGLRLWHKAGLGHVRLLNTYGPTEATVVSSIHDCSTLTPQQVSWRGV
PIGHALAGRRLYVLDDQMNLLPQGAVGELYIGGPGLARGYHAQPGLSAERFVADPFGSGE
RLYRSGDRARLRADGAVEYIGRVDHQVKIRGFRIELGEVESRLQQCTGVREAVVLAVELA
GSTQLVAYAVPDVAASTEAEQLALRQSIRSQLQAFLPDYMVPTHMLLLPELPLTPSGKLD
RKALPTPDASQLQARYRAPRSEVEICLAAIWQDVLHAPQVGLDDHFFELGGHSLLAAQVI
ARIKTQLGVSLPLRTLFEKPLLSELAVEVAALTENSTDNDWSDMDQFMDSLEEFGA