Protein Info for Psyr_1886 in Pseudomonas syringae pv. syringae B728a

Annotation: Hemolysin-type calcium-binding region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 PF00353: HemolysinCabind" amino acids 29 to 64 (36 residues), 25.6 bits, see alignment 9.6e-10 amino acids 51 to 77 (27 residues), 22.3 bits, see alignment (E = 1e-08) amino acids 199 to 227 (29 residues), 13.3 bits, see alignment (E = 6.9e-06)

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1886)

Predicted SEED Role

"Hemolysin-type calcium-binding region"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZV90 at UniProt or InterPro

Protein Sequence (495 amino acids)

>Psyr_1886 Hemolysin-type calcium-binding region (Pseudomonas syringae pv. syringae B728a)
MSTVLQSALSSELDEQITFHKRPSFNTYTGTSGDDALAGTYWDDHLLGGAGDDTLDGHSG
SDTLIGGAGVDTLTGGETYGYGVKFVFTSLTDSYANAQGSHSDLITSFSEYDVLDLTTLH
LERIGNGHNGDLAVSYDAASDITYLRSLDKDASGNFFEVRLAGDYQGKLSTSNFVLRNDG
TAGNDTLYSLSTKQYVLNGLDGDDTLYAGKTGSVLDGGAGADHLIGNTNAETFLYHQISD
SFVNDASGVASVDLISDFNLFRGDVLDVSALGFTGLGDGYDGTLNYAYDKTLGHIVVQSF
EADAQGNRFEVYIDQSNRHGSIAYQDADGFIFAGDNSHDDADQTLTGKPGWDSLHTQDAG
GVLIGGGAGDALTGGSGVDTFRYLDSSDSVHGAADLIKNFDVAHDKIDVAALGYTGLGDG
TNGTLKLVYDKELHHTYLKDYDLNADGQRFEIGLVGTFTKTFTADNLIVAGTVSTAEHAT
VELVGVAPADNHLVG