Protein Info for Psyr_1794 in Pseudomonas syringae pv. syringae B728a
Annotation: Amino acid adenylation
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)" in subsystem Fatty Acid Biosynthesis FASII or mycolic acid synthesis (EC 2.3.1.39)
MetaCyc Pathways
- superpathway of fatty acids biosynthesis (E. coli) (51/53 steps found)
- superpathway of fatty acid biosynthesis II (plant) (38/43 steps found)
- superpathway of fatty acid biosynthesis I (E. coli) (15/16 steps found)
- fatty acid biosynthesis initiation (type II) (3/3 steps found)
- superpathway of fatty acid biosynthesis initiation (4/5 steps found)
- fatty acid biosynthesis initiation (mitochondria) (2/4 steps found)
- fatty acid biosynthesis initiation (plant mitochondria) (1/4 steps found)
- mycobactin biosynthesis (3/11 steps found)
- pederin biosynthesis (2/14 steps found)
- bryostatin biosynthesis (2/19 steps found)
- mupirocin biosynthesis (2/26 steps found)
- corallopyronin A biosynthesis (2/30 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.3.1.39
Use Curated BLAST to search for 2.3.1.39
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4ZVI1 at UniProt or InterPro
Protein Sequence (3064 amino acids)
>Psyr_1794 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a) MMNRHEENIARNPQTLLSRFAEQVRRDPQALAVVDRQVRLTYAQLASASERIAKGLLAQG ASPAEPIALCMPRCWQWVATILAVLKVGAVVVPLDRASPARRRQLMLDDAGCVGLVTLGE DADSLAAPQHGWYVSVEALLEFPDQPALRLPEDFAVSSFLFYTSGTTGTPKAVDVGERGL LRLARTDGCLDIRAGERVACLSNPAFDACNFELWAPLLNGGCCVIIADADLQDAQQLARV LETQQVDSLFMTVSLFNTLSADNPACFASLRQVLIGGEQVSAAAVRAWYQANPDSRCRIF NAYGPTECTTFAVCYPIPRDFAGDAVPIGRPLPDTGVQVLDPQQRPVASGEAGELYLSGS GVARGYRNRCAETAQRFLRLPTTDAGDVLHYRTGDQVRVNADGLIEYLGRIDRQVKVRGF RIEPGEVEQRILEHPQVAQVHVCTRRQAAEDHQLLAFIVPREALDYRDFDQHLRDNLAVW MRPHQLFVLQRLPLTSNGKIDQRALLEQPLKPWRPQAGSRAGEQHSPALDWLLSHARRLL AQPELNGEDDWLGSGGDSLKAMRLRSAIRTHWRREITLGAVLSESFSALAERLGDEQGEA SAYPPAPPVNRSGRAPATAEQSRLWLMQQRTPQATAYNVPLILHLAAGVQLSALVDAVQR LLTRHSGLRTAFVSAADGLHQQVHQREAVCQTFATGAFSEQTWRSFAALVFDTPFDLATS ALCKAWLLPFADGSCRLLLNLHHVAIDGWSMNLLFDDLVQLYDDALQGRPSAEPSPGLGT LEFALWQRQWRVDPRYRDQRRALAGLHRQHPASSPALLPVREPGPQARLYRQPLGTTRSA ALDRFCSRQRVTRYEVLFSVYAWSIYALTGCERPRIASPVSNRPLSEFEDAIGMFANTVL IPTAFDRDKALDQQLHQQTATVREVLALQDVALADLVEDLRLSSSSALFDFMFVLENTDY ARLAQTGLRATLEFNETVQAKCPLTLLVVDAGSQLECWWEYQCSYFDAGQMVAVNQLLQQ GLDLLLEKPSATLDALLTPYRFSLPPASQGDSAEPPFNTVADWFAYQVSCTPDAPALIDD QQCISYAELDALADTLAATLVEQCPLPEENSAPLQVVLYLEASVEHIVALLALARLNLTA VPLDPGYPLAVQRQVMQQAQPGCVLYSAATEAALEQLSADPRVCHRVDLSAAARPFERRR HAGERPLYTLFTSGSTGTPKGVQVPDRTLCNLLHWQRNEGQLPAKSVTLQFSMLSFDVSF QEIFSTLCGGGCYHLINPRWRQDAQALLSYLVQTRIERLFLPCVALQHLAQTAVSQGVYP QALREVITAGEQLLCTEALRNWFGGMPQARLFNHYGPTETHVVSAWRLPAAVHDWPLRAP IGRAVSNARLLLVDEHDRPVPSGSQGYLLVAGPMISRCYLADPALNAARFVELPQPEGLT LFYRTGDLARADANACLHYLGRDDQQIKISGQRLELGQIEAALMQVAQVSNAVVAMQAEP PRLVAWLHSEGTLPDAQQLDRQISLHLPSHVRIDEYRRVDAWPRTPSGKIDRRALGDLGE VLQRQRSGLPAAPLSALEQQLSELFVAVIGRDIEPDQTFFEAGATSLGLMRLHARYNEAL AQPVAMAALFEHVSVRRLAQHLSGPAGQTPGAGKGHERVAKAGEQPMAIIGMSVNVAGAS NLAEFWAMVQGNGLGIERFDAADGLVGARSQLSGLLDFDPEYFGISLQEARLMDPQQRHL LMGCVQALQHAGLTPAADGPRIGLIASCGETTYFQQMLRETAEGDLPDGFQMALHHDKDF LATKAAYHLDLGGPALSVQAACGSSLIAVHLAAAMLRQGDSDVMLAAGVLIDPTLTDGYR YRPQHIFSRDGLCRPFSDDASGTIGASGYGVVVLKPLERAQADGDRIYALVEASALNNDG RAKMSYTAPSVAGQSAVISEALRKAGVNGADMGYIEAHGTGTLLGDPIEVAALTKAFGAA PAARCALASVKSQVGHLGAAAGVVGLIRATLAVFHGVIPPNLGFARINPQIDLEHSPFYI PTTSRPWPEGRRRLAGVSSFGIGGTNAHVIVGAAPQQTDRVEDCPACLLLSAHSRTALER DMLAIEAWLNAFPEQQAALLRYLQNGRRALPWRFAMICQPGQTPRLQASSIKQVTLSDVR VNASEHSPQALLDAWYAGASIEGATGSTPPPWDLPPSAFDLQTFRFKPAVRTELQKSSAV ERQPLADWFYQRQWQRVNRLRTQPTGEGRDVLVVCSHERLEATTLGSLQGVYRHVIEVQA GNGYQQLGPNRYELDPLDPVAFGRLIATLDQNGQTASELDWLHALPLSVGGSVDEQSLAA AQWACLDTLSALLQAWGQNVQKTALRLWLLSWQACPVNGQVMRPELAALAGITEVAPQEY PIRCHWLDLPTAQLSVQALHLAALLAEPASLPRRMAIRDGYLWQPQLLPSPLPSPLATPT AGSNLLPANGTLLVLGGTGGIGRTLCEHLLQSSQRRIVLLSRGGECPKQLHAYASRIDSI AADIADLARWPTVLEQLRERYGHFDGVIHAAGTGAGSLIRQRDAHVLSEAMASKTRGMLA VEALIEQMNPGFVLYCSSMSALFGGAGHLDYAAASAMLDGFTHYRPHAENGCVRLGINWD IWRDVGMAAASGVGDDAHQRHLAVGMSAQEGCRVFDAAMTAQLPQLLISTIDPDTARHFY PVRHSAVATLADTAPALAADTEAPDRLPGHLNDCLCKWLGVNVLQPDASLYELGADSLTL LDLIDELQAATGVVFQLSQFSHKVSLTEVLALVQASAAGTAADEDQWADAVRIDQWHAGA GRERLYLIHPVGGDVQAYRELASALHPDLGVWVIADPALRLPELPNISVDERAQLYLKAL QAHHPDGTAWRLAGWSFGAWVTQAMCSLLKEDCEQPLLYLIDPPAPDAGTELAQIGEAQI QQVFQREFSARRGLNTATSAASEDTSRYLQSLIVCCQNNMASMAGHQPVTLARTPVRLFI ATQPNPYGMGSAWRIADLQRAWQRLLPHMSSWQALDTDHYGIVAAPWAQVIAEMINADLS AAQG