Protein Info for Psyr_1768 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1742 PF20178: DUF6543" amino acids 155 to 388 (234 residues), 28.4 bits, see alignment E=6.6e-11 amino acids 907 to 1162 (256 residues), 93.5 bits, see alignment E=8.7e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1768)

Predicted SEED Role

"FIG00953697: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVK6 at UniProt or InterPro

Protein Sequence (1742 amino acids)

>Psyr_1768 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MPAALPYFFSEALRSRFTQDIQYATDEARITSDEGRWLRSLVATDTSADSGTTFPRVDRL
TIEDGSAGNAELAGALFISDPDNADAPVFLSTLAFGIERFASRSLLLAGLQQRLAEVSDM
SIVEADRVEDALFEARSLAVIRQQARYLEDLWTLLQDLPDLYSACGKALQAVLLARGLGD
GIDVFTQIVQILEMSPAADPGLPSVVGTQYLVDAAVQVFIGELIPTGLTRQFLDARGVIL
SRAQSTLFEQALSDSVSAVSAAYEQLLADYWTSLRPDGRTVKDFATRALAECFRQHLLSS
RAHGAMTDAEYRHLLTLLPSSPEAIDAQSIRVRRLSVSVAGEEPVKLVGVALIEFPADEL
AGVYLYSSLSGLLRFSDSANAIEHVLSDPSRNGMLFYSSLDDHVSIRMQGPVEVRQDTLA
TEFFSDFVGSLIALQKRNLRYALALPAIDAAKIPVRVDDALDIRGLLDGRLLNLHDSGRW
RSERLTFDQAWGASVQTTSVQPSLIPEPSYNWVSKLKKLDWMLERVDALHTGVDSCMRLA
LNRYLAVIGGPHLDAWMLWVLPDAIDAPPVRLLSLALDRVCGYAPAPLSGGVVLAGLLKP
VMDQPVQRLPLALIEQILSCVQLDFPRRFNEQISEFYSRSIRHLDTRLRPDVMCGLIREY
SLRLELLVEKRIATLPDSVIANVQQVLDRPLPALRAALGEARVDAFTVSVEYDPQSAAIK
VPNAFVINNRLPGNKPALWIVNKGLICFETLQVLEQYVAERFTGKELGSHLPGVLAEPDR
QTLLDYRARKGALTLKVVLQRIEGHFIEALQHDEIERQRRTMAELYQQAVTWRVPSELFV
NLLGAGERDDRNRQNLSHLGVAIQFIIYKAIVPSWVREASRADQVMLIDALRRFYVTCAG
KKDFLFDIPSLYEYSCEQLRLRFQTDFTEPRPDPENIRVTLKHFVPAPVAPGQTPQSIPA
ATDAVSENLAEFAINRFLSRQDGVILLSSRDDQPLNASLTPAYVRELVKSLDIAAGYRSL
LDSRLAVTAADYPERRRLFVEQVPSLDILQAFALRLKNELTEQAYQVIENVLSMPDAIAR
LPVNGCKVVLSPLQLLPAKEGWEPTVVLNTYLMGPMDNQPGPWVLYAPLHEDFVFKEYPD
RAALLHDIHTSAFLQQYILDRVDPDVRKLYDNGGFMEPHLPFSAESSFDFPFETPAPVTL
QIDPYEGNCLLLMFRGALDILKLQVQQHSVTNAEQHRATSRYLFTLGAEQVMALMPGRVG
ALIGIIQGQTLLNMSVISAGDQSWGKAFSEFMAALSVMISSGQAPSAFPSRAVDEVNMTA
EEAVLSDPLVQLDDDADVPEFSWSNSSLTQQIRERLRQFEVHDVALNTLQRDELLSTYHD
PLPNREYAAIGGKIYELKSDANGWFIVSGTMVGPPVSLDADQQWKLDIQGGLRGGGGALT
RMEGSLVDDLVDDIMVVNARGMSEIRHSYREMALAIEDAHKQAQYYLENSLANLAIPESA
KAVEPRTEKIIADFFGQKNPDDRLYDVTKKTITDIYQELMNPSMSPIDSQRYVVGINRMG
NEASSAFIFEADPLRRVFLTEQFFRVPTYRFKLSAIRSGEFKHAPHYRAAILIHELSHMV
LKTDDIAYVDSQAPFIDLIEDTPTYRLRIRNELITQQQKTLSYQTDRDKLFKQLDEDTWR
DLRRMDGNGKQTILRICGKKTLEEARDVFYQDVHKRTDVMLKNADSVALLVTLLGRERFV
RR