Protein Info for Psyr_1714 in Pseudomonas syringae pv. syringae B728a

Annotation: exonuclease SbcC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1214 transmembrane" amino acids 1126 to 1144 (19 residues), see Phobius details PF13476: AAA_23" amino acids 6 to 225 (220 residues), 117.6 bits, see alignment E=2.3e-37 PF13555: AAA_29" amino acids 27 to 56 (30 residues), 27.6 bits, see alignment (E = 3.9e-10) PF13304: AAA_21" amino acids 32 to 237 (206 residues), 28.1 bits, see alignment E=4.5e-10 PF13558: SbcC_Walker_B" amino acids 1115 to 1172 (58 residues), 36.7 bits, see alignment 8e-13

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 100% identity to psb:Psyr_1714)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVR0 at UniProt or InterPro

Protein Sequence (1214 amino acids)

>Psyr_1714 exonuclease SbcC (Pseudomonas syringae pv. syringae B728a)
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR
LSNIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNAT
KKLQASRQTLTDLDSEQILSNQSKREFEQLIENRLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEDALKTLTAQASNIIPLAPELLAELEQRL
SDAQQQLKAHQTQQRQLEIKQQWLTELHRLRDEQLAAQEALNSAQQAWDEHSGARQTLGQ
LERLGPQRHRFARRVTLNAQLDPLAEQIRQHQRQQTSLHDQQQQLESRRTQAQTSLLEAQ
QAHSSAKPLLLQAFEAQNTLNHLAQELAKASDLHQQSEQLCIQGKTSLQTLLDQQQQVAQ
RLERIAGQLQHSSELAPLAQAWNAWRDRLKSLTLIANRLKHGHSELPALQQRAKTADQQL
TEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEELARLWASQQDVDRQLA
DLSQQQQSAQQQREQLNSEGLRVRDELTVAEQTLTVTRQLLERQRLARSASVEELRVQLQ
DDQPCPVCGSIEHPWHQPEALLESLTQHDDNEQASAQKAVDLLTEQRNQLREQVGGVIAR
QKELLRQHEQLTVRHQALAPDLESHPLAAQLLDRDADKRDGWLSQQLSQLSEVISRDEQR
QQALLTLQKDAARLQQQLQAATEASQTAAGHVAEQLKQLEADGQRLEEELTAFTPLVSPQ
VLEGLRSDASATVLQLEQQVTQRLDQLEQQHEEQQEQTERQQKIEKQQVEQQTRLHRQTE
LAQELTRLGEQQQTSQQTLAGLLGDHASAEQWQQALEQTIDQARQAESLAAQALQDIHNQ
LIQLAAELKSGQQQQQSLQQELAELDVQISEWRAQHPQLDDSALDTLLTYDDAHVEQLRV
QLNSTDKALEQAKVLLQERDQRLQQHQAQHSDLTDSAQLATALQQALEQSALSEQHCADL
RAELSEDQRRRNANSELQARIADANSEYLRWARLASLIGSAEGDRFRKIAQAYNLDLLVH
HANAQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIKV
RRQGNGLSTIEVGH