Protein Info for Psyr_1705 in Pseudomonas syringae pv. syringae B728a

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4186 PF00668: Condensation" amino acids 25 to 457 (433 residues), 314.6 bits, see alignment E=6.8e-97 amino acids 1095 to 1543 (449 residues), 286.7 bits, see alignment E=2e-88 PF00501: AMP-binding" amino acids 484 to 836 (353 residues), 249.3 bits, see alignment E=3.8e-77 amino acids 1563 to 1901 (339 residues), 239.3 bits, see alignment E=4.1e-74 TIGR01733: amino acid adenylation domain" amino acids 505 to 919 (415 residues), 366.7 bits, see alignment E=6.9e-114 amino acids 1584 to 1976 (393 residues), 361.7 bits, see alignment E=2.4e-112 PF13193: AMP-binding_C" amino acids 903 to 974 (72 residues), 44 bits, see alignment (E = 2.3e-14) amino acids 1961 to 2031 (71 residues), 27.5 bits, see alignment (E = 3.2e-09) PF00550: PP-binding" amino acids 1002 to 1063 (62 residues), 53 bits, see alignment (E = 2.2e-17) amino acids 2071 to 2134 (64 residues), 55.1 bits, see alignment (E = 4.7e-18) amino acids 3824 to 3886 (63 residues), 39.2 bits, see alignment (E = 4.6e-13) PF00109: ketoacyl-synt" amino acids 2160 to 2405 (246 residues), 213.1 bits, see alignment 3.5e-66 PF02801: Ketoacyl-synt_C" amino acids 2415 to 2535 (121 residues), 127.7 bits, see alignment (E = 1.6e-40) PF16197: KAsynt_C_assoc" amino acids 2539 to 2649 (111 residues), 61.6 bits, see alignment (E = 6e-20) PF00698: Acyl_transf_1" amino acids 2681 to 2960 (280 residues), 174.4 bits, see alignment 2.8e-54 PF21089: PKS_DH_N" amino acids 3055 to 3132 (78 residues), 37.4 bits, see alignment (E = 1.4e-12) PF14765: PS-DH" amino acids 3200 to 3314 (115 residues), 54.8 bits, see alignment (E = 5.6e-18) PF08659: KR" amino acids 3556 to 3735 (180 residues), 168.7 bits, see alignment (E = 8.2e-53) PF00106: adh_short" amino acids 3559 to 3722 (164 residues), 42.5 bits, see alignment (E = 3.4e-14) PF00975: Thioesterase" amino acids 3919 to 4175 (257 residues), 90.1 bits, see alignment 1.7e-28

Best Hits

Predicted SEED Role

"Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)" in subsystem Fatty Acid Biosynthesis FASII or mycolic acid synthesis (EC 2.3.1.39)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.39

Use Curated BLAST to search for 2.3.1.39

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVR9 at UniProt or InterPro

Protein Sequence (4186 amino acids)

>Psyr_1705 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a)
MSQKKPVTSTTESAVRMPTPAAGGFLNLSPAQKSLWFMHQMEDASATYNVPFALRIDGAL
DRAALERAVDSVYQRQSALRYRFPCIDGQPVIRLVDEQLLIRKVDLRAEPDSEAALKAFE
QSEARYVFDLEHEALLRATLLHCATDEHVLLINVHHIVFDGWSMQIFLSEVASAYSALVR
GSEVNAEPLNFDFGDYLSLSPSNAERAPDIDHWQRRLAGAPPVLPLPLDNKRPAVQRYAG
QRCHFQVPEAVSDALKNLARECRVTPYMVGLAAFSVLLYRYTQEADLVIGSPMSNRQSSD
LEGVIGFFVNTLPNRIDASGSPSFVELLKRVRASVLDTFEHAHVPFDQIVEAIQPPRSLS
HAPVFQVLFDMANEDFSVELENLRTRVYTLDSCTAKYDLSLTLALTARGMSGAIEYDTAL
LDERAVQGMIDSLLIIMEQVSRNPDGAIDDFSLLSCEAVEQALRLANHQPAAPQAPFAPF
HQWFKRSAAQWGEADALVYENRRYSYAQLDAEARVLAGHLHAAGVRRGDRVAVVQRYGPE
VIIALLAVHQVGGIYVPLAIDDARHADLLKDIEPRLVLTLSACQEQLRGYPCLVQDDLPQ
ATGTLHENEFEGRNTQPEDIAYIIFTSGSTGRPKGVSVSHGSWVSLLQALEQTYGQTEPG
VTGILQMANFTFDVFMSDVVRALAVGARLIMCPRQSLADPEQLYELITAERVTLLEFVPA
VLRQMIRYLEETGRRLDTLRTLTCGADVWFVHEYRKMQTLCGPQTRVVSVYGVTEATCES
ATFEPDAGWYDPERSLPIGGPLPNTSLYLVDATLNLVPRTVPGELLIGGGAVASGYMNRP
ELNEKSFLTGSFSASGRFLPGVGEQRFYRTGDLCRHMRDGTIEFLGRSDNQVKIRGFRIE
LGEVESVLADHPDVNECAVVTRQSPGAEAELIGYVQTRATAQQLNAYLGERLPGHMVPRL
LVVLAALPLTANGKIDRKSLPEPDWTQDSRAYAAPRNSLEEQLVEDWQHLLNVPRVGIDD
NFFESGGHSLLVTQVIAQIKKRFGVALSIANLFEGPTVAQVAEKIMLSMIQISQGASVAS
RPAAIGRSSGIERQRLSFAQRRLWLTQHSEPGTAYNMPEICRLTGQLDIPALEGALNLLL
ERHEVLRTHFTRELETFVDTQGVTQKEPLVVTSHADSARVPFRLQTIAREALTAALEREV
HTPFVLDKELPIRALLLQTASDEHVLCLTLHHIAYDGWSSALLRQELAVFYRHLTQGERI
TLSPLEAQYQDYAAWQRNQLETGAFTTQLDAWKASLQDLPPPLVLPVRSSPREGNPLAGD
YVALTLPGDCSARLDQLCLRLQCTPAMVMHAAFALLLHRYTGQDDILIGMPFSGRDHDES
TNLIGFFVNLLPLRLRLRGPLRVAQVIEQSRQALLAAEANQSVPIDYLAQVLNPQRLPGK
HPFFQAGLVVQSTTAVPLSLPHVTSEEISLASTEVKLDLMLELRAVKGEGVSGVFKYRTS
LFERSVISGMAGHFQCLLENMLANDEQTVAQVKMLSATEQQRLISQFNDTARDFGDGDVV
SRFEQRVRQTPQAMALQLQQRCWTYAELDRLANGIAHALIKKGVQAGEHIGLFTGRHPYL
VAGMLGILKARCAFVPLNPQDSMEGALGYMIKDAALHRVVGHRGLAHELAALGLETLLVD
DFEGEQGEWSAPACQREPQDLAYILYTSGSTGQPKGVMVSQCNIDNTASAFARTLELTGQ
SRQLQYFSPVFDGVCGEVFPVLISGATLVFAASEQLLPGPDLVTLLREQRITHLQITPTA
LRLLPHAELAELKVIISAGEACPANVAQTWAAGRRFLNGYGPTETTVYASARDYWDERGA
LVLRPLDNVRMYVLDRYLNPLPCGVPGELYIGGSGVAQGYLNLDERTAQAFLPDPYGVSP
EARLYRTGDFVVRQFNGSLSYVGRIDNQVKIRGFRIELGDVETRLNAIAGLEQAVVVVKQ
DDQGHKALVGYYVGKPSVAQVRAELARVLPAHSVPERLVCLPELPLSRTGKVDRKSLENR
VDQRAQEGTAVGTPATLPAAVRPAGKRLHNTVRTIWQEVLDCQEIDSDDNFFDLGGHSLR
IVETQKRLSELLQAPVAMTDLFEYPTLRGLVAHLERLHGPLPEVRQASEASPAIDPGNRT
LAVVGMAGRFPGAADLSEFWQNITEGVESTLYFSDEVMLAHGVNPDLLERADFVKCGNRL
EDVDKFDAEFFGFSPREAQLMDPQQRIFLQCAWAAMEAAGYGGALNDLRVGVFASASTSH
YLLDHVYPRRQELQLENIQWLLGNGRDFMASRVAYKLNLAGPAITVETACSSSLVAVQMA
CESLLRGESDMVIVGGASVEAQYYGYQAAPGSIISVDGHCRPFDAQASGTTGGSGCAVLV
LKLADRAIEDRDHIHALIKGGAINNDGSSKVSYTAPSVHGQAQVVSAALDAANISADSIG
YVEAHGTGTRLGDPVEVRALTQAYTSALPHFTPGFCALGSLKSNIGHLDAASGIAGLVKA
ILAVQHNVLPASLNFTRANPEIDFSDSPFYVNTTSRPWPAAASPRRAGVSSFGIGGTNAH
VIVEEPPQPSVRPHDDSERWYILPFSARSAAALDHQRRQLITCLQNPAADLRDIAFTLGE
GRTRFAFRDSVVSQSIAGALHALQAPSSTALMERRQDRPIVFMFSGQGSQYAGMFKGLYD
SEAVFRQTVDRCAVILQRYGVDILACLYPPAGSKTGDALSRTEIAQPALFVVEYACALLL
QSRGIHPQALIGHSLGELVAACFAGVYSVEDSLKLVVERGRLMQRQAPGAMLAVGLSEAD
CARFLEPGVELAAVNGPLQCVLAGDFEAIARVERQLAEEGLVGRVLDTSHAFHSRMMAPA
AHALKAVVNGFSVQPPTIALVSNHNGGWFSIDSSSQSDYWASHLLETVRFSDGIGLLADE
LEEPIFLEVGPGRALQSALKSYAEPLCVLGCTRHARDSRSDEAALAQGIASLWRQGARFG
WAQATGCTDGARVPLPTYPFARDSHWIEAAGTASSAQHEAPLFLHWQRMNGNRRQFRLSL
SPQLWLVDEHRVFEGRPVLSGTGCVELVRNAYARMEGVESIELSDVYFPTPLVLEDEQAS
QRVLITFKDHAESTEFFLESVSDEGNGPQQRTMLHAQGFIKRHDRERSVPTALMQLQADH
ADCLADEVEHAALNTRLGLFGPRWKCFRSIWLSEDEGLALLELDQAFAADVEHFALHPAL
LDMATGFLSIMENRARRLPFHYQRLTIHAPLRSRLYSHARRVRSNVYDVQLFEVDSDGGV
GALLAEVTGFTLREERVASEAQRTEPLDWCQAPAWRPALPPRSDSPLQGPWLVVMRGVAA
DNSMLFSLPPDSVCIADAGDSGTAVATIARGDAQAYEQLFNTLAAQDALPSQIIYVAGQA
QPTHGEHAAIGLFTDLMSLVQAYIPHAANTTVLSLVTEGACQVDDDEPVNSCVATLSGVV
RTLAWELPQIQCRHFDLPLVNAAENETLLLQALQHIDPDQASPLASTLALRKQTFHEPCL
RALQVSPPSQPFEEGGTYVVTGGLGGMGLALASHLAAKAKAVTLVLMSRSATVTDEVGQA
LQALEQQGARIQHMAVDCADREAFTAALHQVRLQHGRISGAIHAAGVQASGLIQLSQATA
WAQVMGSKVVGTDVLIEVLRQEPVDFIFLCSSLASVLGGLGQADYAAANAYLDARAQACR
QEGIPVVSLNWDAWAQAGMRVAYDRAHPEQAPIDDVRGLTNAEGCQLFELALAQNTAQVI
VSKAQDLQQLIEQLQRGGATSAGRATPLFDSGAERVAPRNAVEQEVAQLWQELLGGDMPG
VLDNFFDLGGHSLLGSQLISRIRSRFQQCLTLAEFLDEPTIERIARSLGSGADDTPIDAD
EAAVRYCLVPVQRNGEGRPFFCLPGMGGNVNQVLGLAKAMGTQRPFYGLQCLGLDGKAEP
HLSVEDMAEHYIRCMKSVQAHGPYLLGGHSLGGKVAYEIARRLEARGDQVGLLALFDSAA
PPYTQMQVPTDAQVLGSLLSIFGHYFDKPIKLSREELQALEHLDDEEKIRYLKDTLESHG
LLDARGDEGSIRGLFNVYKAAAAFGMRYDPPKVALDASLVLFRAVDSMPSGINLPEIRDT
DAWGWESFSAAKVRTVDVSGDHFTCLSVHARQIADVLIEQLAECDR