Protein Info for Psyr_1701 in Pseudomonas syringae pv. syringae B728a

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 transmembrane" amino acids 25 to 43 (19 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 341 to 364 (24 residues), see Phobius details amino acids 373 to 398 (26 residues), see Phobius details amino acids 419 to 446 (28 residues), see Phobius details amino acids 628 to 646 (19 residues), see Phobius details amino acids 653 to 675 (23 residues), see Phobius details amino acids 681 to 700 (20 residues), see Phobius details amino acids 727 to 747 (21 residues), see Phobius details amino acids 755 to 779 (25 residues), see Phobius details PF03176: MMPL" amino acids 480 to 779 (300 residues), 95.8 bits, see alignment E=1.3e-31

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 100% identity to psb:Psyr_1701)

Predicted SEED Role

"FIG005548: transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVS3 at UniProt or InterPro

Protein Sequence (796 amino acids)

>Psyr_1701 membrane protein, putative (Pseudomonas syringae pv. syringae B728a)
MSTHQHAQDPDEKATFLERLIFNHRPAVILLCLLASLFLFWQATQVRPSTSFEKMIPLSH
PFVQNMLKHRNDLANLGNTVRISVEAVDGDIFSKEYMETLRQISDEVFYIPGVDRSGLKS
LWSPSVRWTEVTEEGFAGGEVIPQSYDGSDASLDQLRNNVLKSGQVGRLVANDFRSSIID
VPLQESYPDPADQGKLLALDYQQFSHQLEEKIRDKYQAQNPDIRIHIVGFAKKVGDLIDG
LFMVVMFFGIAFLITLVMLIWFTRCIRSTVAVLSTTLIAVIWQLGLMHVVGFGIDPYSML
VPFLIFAIGISHGVQKINGIALQSSEADNALTAARRTFRQLFLPGMIAILADAVGFITLL
IIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKKAVSRSKQDAVSEHPFWRLL
ANFASARVAPVSIVLALLAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNRDNAFIINHYS
TSSDVLVVMVKTGPEGCSAYSTMSAINELAWKMENTQGVQSAISLVTVSRQMIKGMNEGN
LKWESLSRNKDVLNNSIARADGLYNTDCSLAPLLVFLNDHKAETLHRAVHAVQDFARQND
TPDRQFLLAAGNAGIEAATNEVIKQSEWVILLLVYLCVAAMCMITFRSWAATLCIVLPLV
LTSVLGNALMAFIGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYET
LKSTGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLI
RPEKMAGKVGNSLFSH