Protein Info for Psyr_1612 in Pseudomonas syringae pv. syringae B728a

Annotation: septum site-determining protein MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 TIGR01968: septum site-determining protein MinD" amino acids 2 to 267 (266 residues), 377 bits, see alignment E=2.3e-117 PF06564: CBP_BcsQ" amino acids 3 to 148 (146 residues), 25.9 bits, see alignment E=2e-09 PF13614: AAA_31" amino acids 3 to 156 (154 residues), 63.3 bits, see alignment E=8.5e-21 PF10609: ParA" amino acids 3 to 245 (243 residues), 52.4 bits, see alignment E=1.6e-17 PF09140: MipZ" amino acids 4 to 142 (139 residues), 32.1 bits, see alignment E=2.2e-11 PF01656: CbiA" amino acids 5 to 226 (222 residues), 68.4 bits, see alignment E=1.7e-22 PF02374: ArsA_ATPase" amino acids 6 to 40 (35 residues), 30.1 bits, see alignment 9e-11

Best Hits

Swiss-Prot: 74% identical to MIND_SHIFL: Septum site-determining protein MinD (minD) from Shigella flexneri

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 100% identity to psb:Psyr_1612)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZW12 at UniProt or InterPro

Protein Sequence (270 amino acids)

>Psyr_1612 septum site-determining protein MinD (Pseudomonas syringae pv. syringae B728a)
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDF
VNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDS
PAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLT
RYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSD
AVDRLLGKTLEHRFLDVHKKGFFERLFGGN