Protein Info for Psyr_1283 in Pseudomonas syringae pv. syringae B728a

Annotation: 16S rRNA processing protein RimM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 TIGR02273: 16S rRNA processing protein RimM" amino acids 11 to 178 (168 residues), 179.4 bits, see alignment E=1.9e-57 PF01782: RimM" amino acids 13 to 95 (83 residues), 88.9 bits, see alignment E=3.1e-29 PF05239: PRC" amino acids 103 to 174 (72 residues), 31 bits, see alignment E=3.1e-11 PF24986: PRC_RimM" amino acids 107 to 176 (70 residues), 37.5 bits, see alignment E=2.2e-13

Best Hits

Swiss-Prot: 100% identical to RIMM_PSEU2: Ribosome maturation factor RimM (rimM) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K02860, 16S rRNA processing protein RimM (inferred from 100% identity to psb:Psyr_1283)

Predicted SEED Role

"16S rRNA processing protein RimM" in subsystem Ribosome biogenesis bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZWY8 at UniProt or InterPro

Protein Sequence (179 amino acids)

>Psyr_1283 16S rRNA processing protein RimM (Pseudomonas syringae pv. syringae B728a)
MNATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELV
SGRLQSKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLG
QLLGKIDHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVDWDADF