Protein Info for Psyr_1168 in Pseudomonas syringae pv. syringae B728a

Annotation: nucleoside ABC transporter membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 42 to 60 (19 residues), see Phobius details amino acids 72 to 103 (32 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 198 to 216 (19 residues), see Phobius details amino acids 223 to 240 (18 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 272 to 290 (19 residues), see Phobius details amino acids 296 to 315 (20 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 60 to 334 (275 residues), 90.7 bits, see alignment E=4.7e-30

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to psb:Psyr_1168)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXA0 at UniProt or InterPro

Protein Sequence (369 amino acids)

>Psyr_1168 nucleoside ABC transporter membrane protein (Pseudomonas syringae pv. syringae B728a)
MSSSISLRRLASALLPGLPTLLAVFSSCVLFGLFLAVQGKPAWQALHLVGEGAFGSWFAL
ENTLQRAAPLMLTALCVALPARAGLIIIGGEGALVLGGLAAAVTPLWVSDLPAGLMLACM
AVAAMTVGALWIGLSGWMRQRRGVNETISSLLLSYIALALFRQLVEGPLRDPASLNKPST
PPLDDAYMIGTISDSFEVHWGLVAGVVACLLAYVLVRHSVKGFALAVVGGNVRAALMIGL
PVDRLIMLSCLLGGAAAGLAGMFEVTAVQGSANAALIAGYGTSGILVAFAARHHPLAIIV
CAILLGGLEASGGLLQRRLGLPDATTLILEGLLFTNLLLWEALGGRIAAWKIRLTAAPAP
LDKGALQHG