Protein Info for Psyr_1158 in Pseudomonas syringae pv. syringae B728a

Annotation: Gluconate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 110 to 141 (32 residues), see Phobius details amino acids 149 to 167 (19 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 278 to 299 (22 residues), see Phobius details amino acids 311 to 328 (18 residues), see Phobius details amino acids 348 to 364 (17 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details amino acids 395 to 418 (24 residues), see Phobius details amino acids 430 to 455 (26 residues), see Phobius details TIGR00791: transporter, gluconate:H+ symporter (GntP) family" amino acids 16 to 451 (436 residues), 426.4 bits, see alignment E=7.5e-132 PF02447: GntP_permease" amino acids 16 to 451 (436 residues), 462.5 bits, see alignment E=1.4e-142 PF03600: CitMHS" amino acids 28 to 401 (374 residues), 56.1 bits, see alignment E=3.6e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1158)

Predicted SEED Role

"Gluconate transporter family protein" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXB0 at UniProt or InterPro

Protein Sequence (456 amino acids)

>Psyr_1158 Gluconate transporter (Pseudomonas syringae pv. syringae B728a)
MDLSSAAWVFHDTRLIICCLIAIATIIVLISATRLPPFLSILVGTFIAGIGAGLPAEAVA
KAFSKGAGSILGEAGIIIALGAMLGALMAESGAADRIASTLLRLGKGRTLPWIMALVAMV
IGLPLFFEVGLVLMVPIIFVMARQSGQPLLKIAIPALAGMTTLHALMPPHPGPLIAVSAL
HADLGLTMLLGLCIAVPAVILAGPLYGNWLSGRMHVEEPAELGELFSAKPETSRQPGFGI
SLLIILLPVILMLGSTFAKIALEPESNIALTLKFLGEPLVALGIAVLAATVCLGWANGLS
REHVGGTLRKSLAPIAVLLLTIGAGGGLKQTLLDAGVSQTISKVAEGAHMPYLLLAWLIA
VALRQATGSATVATTTTAGILAPMMAGLAPVQASLVALVIGAGSVFFCHVNDAGFWMVRE
YFGLQLKQTIWVWSVLQTIVSVVGLVGTLLLWHWLT