Protein Info for Psyr_1045 in Pseudomonas syringae pv. syringae B728a

Annotation: RND efflux system, outer membrane lipoprotein, NodT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 16 to 475 (460 residues), 356.3 bits, see alignment E=1.3e-110 PF02321: OEP" amino acids 74 to 263 (190 residues), 71.5 bits, see alignment E=4.1e-24 amino acids 289 to 474 (186 residues), 76.9 bits, see alignment E=9.2e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1045)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXM1 at UniProt or InterPro

Protein Sequence (494 amino acids)

>Psyr_1045 RND efflux system, outer membrane lipoprotein, NodT (Pseudomonas syringae pv. syringae B728a)
MPRRIIRGLWPVGILAFTLVISGCIGTHGIKSQGSLLHADSLVTDQAIQSAALDAHWPAA
QWWRAYGDAQLDCWVEMATLGSPSLALAAARVRQARAMAQVAESAESVQLQGNASLMRHD
WPEDQFYGPGALADTRTWDNNASLGLSYALDLWGRERNASEQAVDLAHVSAAEQRQAQLE
LQENVVRAYIQLSLDYARLDIAEAALAQQQQILDLAQRRLKGGIGTHFDVSQAETPLPEA
HRQIDALQEAIALSRNQLAALAGKGPGQGAALQRPALSLHTALTLPSALPAELLGQRPDV
VAARWQVAAQARGIDVAHGGFYPNVDLVGSLSYMATGGGVLEFLTGSKLGYKVGPAISLP
IFDAGRLRAELGRASAAYDQAVAHYNQTLVMALKSVSDQLIRRASMDKQQALAAESVASA
QKTYDIALIAWQRGLTDYLNVLNARTQLFRQQQVQQQVEAARLEAYAGLVVALGGDGDGN
GHSAHTAAESGGGQ