Protein Info for Psyr_1042 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function DUF6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 51 (21 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 183 to 206 (24 residues), see Phobius details amino acids 212 to 234 (23 residues), see Phobius details amino acids 243 to 260 (18 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details PF00892: EamA" amino acids 5 to 134 (130 residues), 51 bits, see alignment E=8.7e-18 amino acids 149 to 285 (137 residues), 49.1 bits, see alignment E=3.2e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1042)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXM4 at UniProt or InterPro

Protein Sequence (300 amino acids)

>Psyr_1042 Protein of unknown function DUF6 (Pseudomonas syringae pv. syringae B728a)
MNLSLYLLTVLIWGTTWIALKLQLGDVAIPVSIVYRFALAALVLFAFLLLSKRLQPVNRR
GQLICLAQGVCLFCVNFMCFYTASQWIPSGLIAVVFSTSTLWNALNARVFFRQKIAGNVM
AGGAMGLLGLACLFWPELSGHSASRETLIGLGLALLGTLCFSAGNMLSSLQQKAGLRPLT
TNAWGMFYGATILGMYCLLSGTPFSFEWNTRYVGSLLFLVIPGSVIAFTAYLTLVGRMGP
ERAAYCTVLFPIVALNISTWVEGYQWTLAALLGLGLVMVGNVLVFRKVRPVAVVVGGKLA