Protein Info for Psyr_1012 in Pseudomonas syringae pv. syringae B728a

Annotation: Glycosyl transferase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 PF13439: Glyco_transf_4" amino acids 18 to 184 (167 residues), 101.9 bits, see alignment E=1e-32 PF13579: Glyco_trans_4_4" amino acids 19 to 174 (156 residues), 60.2 bits, see alignment E=7.8e-20 PF20706: GT4-conflict" amino acids 194 to 367 (174 residues), 33.3 bits, see alignment E=6.8e-12 PF00534: Glycos_transf_1" amino acids 195 to 356 (162 residues), 103.7 bits, see alignment E=2.1e-33 PF13692: Glyco_trans_1_4" amino acids 208 to 343 (136 residues), 95.5 bits, see alignment E=9e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1012)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXQ4 at UniProt or InterPro

Protein Sequence (406 amino acids)

>Psyr_1012 Glycosyl transferase, group 1 (Pseudomonas syringae pv. syringae B728a)
MSQILNVTLITETFTPEINGVANTLGRLCEGLRLRGHRVELVRPRQNDETGAGTAEDLLL
CRGWPIPGYPGLQWGQSSMHKLLRRWQRRRPDVLYIATEGPLGLSALRAARRLGIAVISG
FHTNFPQYTQQYGMGFITRLLTHYLRWFHNRSRMTLVPSISQKVELERRGFERIELLSRG
VDSQLFSPSRRSQPLRENWGLQPDDVAVLHVGRLAPEKNLSLLKACFEALKDSYPQRNLK
LVVVGDGPQRAQLEQQIPEAIFCGTQRGEVLATHYASADMFLFPSLTETFGNVVLEALAS
GLGVVAYDEAAAGQHIRHGHNGALAMPGDEAAFIDAARWLLEDSETLRRVRLNARQHASR
QGWTAVIDQFERQLREACPSQNAASVKEIRSVASKKIRPVSSVRLD