Protein Info for Psyr_0989 in Pseudomonas syringae pv. syringae B728a

Annotation: Lysine exporter protein (LYSE/YGGA)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 65 (25 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details amino acids 130 to 142 (13 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details PF01810: LysE" amino acids 16 to 206 (191 residues), 109.7 bits, see alignment E=6.6e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0989)

Predicted SEED Role

"L-lysine permease" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXS7 at UniProt or InterPro

Protein Sequence (210 amino acids)

>Psyr_0989 Lysine exporter protein (LYSE/YGGA) (Pseudomonas syringae pv. syringae B728a)
MYWAEFLTVALIHLLAVASPGPDFAVVVRESVTHGRKAGTWAALGVGSAIFLHVGYSLLG
IGIIVSQSIVLFNALKWAAAAYLLYIGIKALRAKPAAATGDTAIKATPGERTARGAYISG
FVTNGLNPKATLFFLSLFTVVINPHTPLLVQGGYGVYLAVATAAWFCLVARLFSQARVRA
GFARMGHWFDRAMGGVLIALGIKLALTEVR