Protein Info for Psyr_0919 in Pseudomonas syringae pv. syringae B728a

Annotation: Chromosome segregation ATPase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 646 PF13489: Methyltransf_23" amino acids 21 to 159 (139 residues), 47.7 bits, see alignment E=2.9e-16 PF07021: MetW" amino acids 34 to 103 (70 residues), 34 bits, see alignment E=4.7e-12 PF08241: Methyltransf_11" amino acids 44 to 137 (94 residues), 46.9 bits, see alignment E=7e-16 PF13649: Methyltransf_25" amino acids 44 to 133 (90 residues), 41.4 bits, see alignment E=3.8e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0919)

Predicted SEED Role

"WbbD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXZ5 at UniProt or InterPro

Protein Sequence (646 amino acids)

>Psyr_0919 Chromosome segregation ATPase-like protein (Pseudomonas syringae pv. syringae B728a)
MTVPFYRAFEDRYRGSRELIHERQQVYIPFLEPLKQIYPESQALDLGCGRGEWLEILIQN
GFQALGIDLDVGMLEACTALGLPVENMDALEKLRSLPDESMTVISGFHIAEHIPFGDLKV
LVAEALRVLKPAGLLILETPNSENLVVGTQTFYLDPTHTCPIPHLLLSFLTEYSRFSRSQ
LLRLQEPVALSEGGPVDLFSVLHGVSPDYAIVAQKAAAPEQLEIFDAVFGKEYGMSLESL
SRRYDSQVAGWVEKSDATCAELREQLNQVQQRGQELEQIVRALEESGTATETELREQLNQ
VQQRGQELEQIVRALEESGAATETELRQQLNQVQQRGQELEQIARTLEESGAATHAELRD
QLSHVQEQGKHLESSVHALQNNDEVEARIREVTLRAELAESRVHSFQLGQEAAQLRMNES
EARLNEAFSYLKELQAQVTQLQQDTGVTKVTDAVSAQARVDELQARLKESLDNAHHWWLK
ANENQVEQAQMHEIQAQLDQSLNNAHHWWLTATAYEARIAQFENSRSWRITRPLRTSASL
SSKASRVPSSLFKRVVRSVLARSIRFVLNRPRLRTRLVNKAQAYPNFLNSVRQFALRHGI
IQPRPHEVTPVTAATEATDDGFPTASPRVARVYSDLKLAFERKENR