Protein Info for Psyr_0870 in Pseudomonas syringae pv. syringae B728a

Annotation: GGDEF domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 transmembrane" amino acids 52 to 73 (22 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 138 to 154 (17 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 186 to 209 (24 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 233 to 394 (162 residues), 139.2 bits, see alignment E=5.4e-45 PF00990: GGDEF" amino acids 235 to 392 (158 residues), 141.9 bits, see alignment E=7.8e-46

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0870)

Predicted SEED Role

"GGDEF domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZY44 at UniProt or InterPro

Protein Sequence (397 amino acids)

>Psyr_0870 GGDEF domain protein (Pseudomonas syringae pv. syringae B728a)
MLVSALERPSLEDAQLLAEVEQTITSGVGSLRFSRVLEQRYQEETRLPRREFLTAVGIGG
SLVYNLFLISDWLILRDVFAYVAVGRLCLITPMFIALLMLAQRVATRWAMETIAAFATVV
CSLMPMLVMIHSDSPYQIFYQLGMLLIMVYCTMIQQLPLRHAAVAMLCMLIIQLVTTYIA
DFADFVIWQANAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLT
RLFNRRYQDEVMASVWEHARNAPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQ
QSAHEHGAVAFRFGGEEVLVLMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISL
GVACATAPLTSAENLIGAADNALYAAKRAGRNCVCFA