Protein Info for Psyr_0816 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 751 PF07793: DUF1631" amino acids 22 to 745 (724 residues), 849.7 bits, see alignment E=1.2e-259

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0816)

Predicted SEED Role

"Thymidine phosphorylase (EC 2.4.2.4)" in subsystem Deoxyribose and Deoxynucleoside Catabolism (EC 2.4.2.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.2.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZY98 at UniProt or InterPro

Protein Sequence (751 amino acids)

>Psyr_0816 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MPNDEKVVPLSKSFPLQGAGTPLARLPVVLLQVRDKAAQQLKDALQALFDNADDTLFEMA
DRARSNTEQNIFFEAMRDLRLKRKSIERGFLDKFYESFLVLGQYQIQEPVLPAAVSFDKL
SLVHNDDLEKTVAVDAMVSKVMSRDALALGQLTARLNVLIPQAIAEDSNPLGPAMLCRFF
LEAGRSLGVEIKVKLIILKLFEKYVLANTDDLYSEANQLLIATGVLPDMKALPARRSSDR
AAPRSRVAEMSDPVLNEAADKLDKGVQEVFSALQELLLHVRGNLAPRHEPNAEVRPISSR
DLLRLLSHLQQYVPSQDTSDDFDLRNQLEQLLTRVNVKTGKSRIVGVGDEDVINLIAMLF
EFILDDRNLTPSLRALIGRLQIPMLKVAVIDKSFFSRGSHPARRLLNEIATAALGWGGRD
DYQRDSLYQRVEQIVQRLLNDFVDDPAIFSELLADFLAFTSDERRRSELLEQRTRDAEEG
RARAELARQQVQHELNQRLLGKTLPEVVVRLLQEAWSKVLLLTCLKHGEESSEWQAGLET
MDELIWSVELHDDPHALQRLLDLVPGLLKSLRDGLTSAAFDPFATSDFFSQLESLHVQAF
QHFSRLQEGEGGTAQGDTAQADGQAVEGPPMMAVVEEIVLITPEEQMLNEPVVQLPDDDA
GLQMVDKLRVGCWVEIQEDEEHKLRCKLTAIVEPTGRYVFVNRTGMKVLEKTRTGLAVEF
RRGAVRILDDALLFDRALESVISNLRKLKGA