Protein Info for Psyr_0769 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical membrane-anchored protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 147 signal peptide" amino acids 5 to 5 (1 residues), see Phobius details transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details PF20730: YetF_N" amino acids 11 to 67 (57 residues), 26.7 bits, see alignment E=4e-10 PF04239: DUF421" amino acids 78 to 145 (68 residues), 54 bits, see alignment E=1.3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0769)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYE5 at UniProt or InterPro

Protein Sequence (147 amino acids)

>Psyr_0769 conserved hypothetical membrane-anchored protein (Pseudomonas syringae pv. syringae B728a)
MDAVLRAAAIYFVLMVLFRVAGRRSLTDLTTFDFVLLLIIGEATQQALLGDDFSVTNAIL
IISTLIAIDVGFSLAKRRSKRLAKFLDGGPTVIVEDGKPLTKRMREARISESDVMEAART
TQGIVEMKDIRYAIIERNGEISVIPFK