Protein Info for Psyr_0686 in Pseudomonas syringae pv. syringae B728a

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 92 to 119 (28 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 203 to 220 (18 residues), see Phobius details PF21724: DUF6861" amino acids 57 to 250 (194 residues), 216.4 bits, see alignment E=2.5e-68 PF15604: Ntox15" amino acids 311 to 452 (142 residues), 94 bits, see alignment E=9.8e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0686)

Predicted SEED Role

"FIG00960180: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYL6 at UniProt or InterPro

Protein Sequence (455 amino acids)

>Psyr_0686 hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MSLWTKIPSWLDIEAYAERLFRKGDLGVRERGMNPLSPPSSINILSIDLIYRRVRCVRQA
CDLGEKEATNSILKRFSDLDIRSIIDEMISTVVDMAMIIIGSALTGATIGGGVGLLAGGV
GAFPGATAGALIGVQAGTWILGVLGLASIAEFFTEGLKPIATGYIRGVSTAWNGPRERTG
NPLSSFSDDTMSAQQGAWDIARSHEAVVILLLSAIVAYLTRGRGNLSVLATEMRGSERGA
KLGQWMLKHEDALKKHPDLQTAEPRRGALGPQEPPPNSPSAKDKEPPKGKPNTMPRHEVE
CFKADKMPASKVGEFERQLKGQEDGLNRLTVEEYLKNIANPVKRDAMAAKKARTDLKDTL
QERFQREFQKEMSPLDAEEAAIKKARETMASLAGLHNPDLTAGGKDIIADFGDRQVNSSI
GPQWRPKIQNLKAAAEKVPETMRDSTFLNVKLHKC