Protein Info for Psyr_0685 in Pseudomonas syringae pv. syringae B728a

Annotation: PAAR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 PF05488: PAAR_motif" amino acids 4 to 51 (48 residues), 41.6 bits, see alignment 1.1e-14 PF15607: Ntox44" amino acids 234 to 345 (112 residues), 81.9 bits, see alignment E=5.5e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0685)

Predicted SEED Role

"FIG00960460: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYL7 at UniProt or InterPro

Protein Sequence (379 amino acids)

>Psyr_0685 PAAR (Pseudomonas syringae pv. syringae B728a)
MISSARLGDKHACPLPGHGTTPIASASGDVNINGMGAARVGDTCGCGAVITAGFPSILVN
GRPMAHLGSPTSHGGTIITGSSNVGGGFVMGDAGGATIINFMALGAFRPDGSVDDEKMAT
LLADPKLTEKALAANALVDPEAAGKKSDAQPESKAEPVVCKHPDRMEELATYIAGEMNAN
INSPEVLQIQELNSFDPDEETRKYAALPFYLRLGQGPDFHTMALVKKTKAFAIWTERVGQ
DRPWDHKPILAKLFGGIWQKQGEYEYFYDIWSNVHYGYVGVAGRFSESVLLDGAGIEQIG
SDTWRLIKDPKRFDGPRRTEGVEGMRAWDDTPDRVSIMIRMNLYKEYPNGGLTGKIVMDK
VLAVPISDWATGVQPHVCK