Protein Info for Psyr_0556 in Pseudomonas syringae pv. syringae B728a

Annotation: Histidine kinase, HAMP region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 163 to 187 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0556)

Predicted SEED Role

"HAMP domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYZ6 at UniProt or InterPro

Protein Sequence (513 amino acids)

>Psyr_0556 Histidine kinase, HAMP region (Pseudomonas syringae pv. syringae B728a)
MNRPTPVKTDNFFLLIFRALRHRRVPIALRIASHNVILVALALVIYAGVMGLQFKQAMHE
QADALGQALTTQTATSATELLVSNDILSLNVLLGNLVKNPLVAHAAIYSVDNRILAEAGQ
RPKNGLLGEAQGLYEIKITFQDVMAGHLRISLDMSQFQQPLTISLQSMGILAGILLALAL
ALSLRLGRHISTPLMQMRIWLRDIDPYTPATDRQDEIGDLARQLRTSFAPPVPEPEPLPE
PEYDGEEDDSEDPYLEPEEKPAPVVSARSSEAKPRLPAPPVQRRIVAEEDEDDDEDPFAD
LRDHSDNSPAVRPAAASVAPVEPHNSAVLAVQLGAQDQLRRLPRARLTELLQRYRDCLDQ
AASLYESELHTLNDGSTLMLFHSHESGDDYLTNAICCGELLRALSHALQIEVADSGITLQ
LQLGLTLGEGLSGLSQIDLLLTETAQDALALSQHSRNLLLVERRINDDPLIRQRARIRPI
ASPEGACCVERLMEPYPSMLERQLARMHESNKA