Protein Info for Psyr_0536 in Pseudomonas syringae pv. syringae B728a

Annotation: ABC transporter, transmembrane region:ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 77 to 102 (26 residues), see Phobius details amino acids 158 to 175 (18 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details amino acids 262 to 286 (25 residues), see Phobius details TIGR02203: lipid A export permease/ATP-binding protein MsbA" amino acids 14 to 592 (579 residues), 843.3 bits, see alignment E=4.6e-258 PF00664: ABC_membrane" amino acids 30 to 305 (276 residues), 168.4 bits, see alignment E=2.9e-53 PF00005: ABC_tran" amino acids 370 to 520 (151 residues), 111.5 bits, see alignment E=5.1e-36

Best Hits

Swiss-Prot: 100% identical to MSBA_PSEU2: Lipid A export ATP-binding/permease protein MsbA (msbA) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K11085, ATP-binding cassette, subfamily B, bacterial MsbA [EC: 3.6.3.-] (inferred from 100% identity to psb:Psyr_0536)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZ16 at UniProt or InterPro

Protein Sequence (600 amino acids)

>Psyr_0536 ABC transporter, transmembrane region:ABC transporter (Pseudomonas syringae pv. syringae B728a)
MTTSESSATSSVKIYFRLLSYVRPYVGIFLLSIIGFVIFASTQPMLAGILKYFVDGLTNP
EAVLFPNVPYLRELQLLQAVPLLIVLIAAWQGLGSFLGNYFLAKVSLGLVHDLRVELFNK
LLVLPNRYFDTTNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFIYLLMMNWKL
TLVMLAILPLIAVMVGTASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQ
ARFAQASNSNTQKQLRMTKTGAIYTPMLQLVIYSAMAVLMFLVLFLRGEATAGDLVAYIT
AAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDVEEEVDTGTIERERVTGHLEVKNLSF
FYPQTARQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHDIGNILLDGVEIND
YRLRNLRRHIAQVNQNVTLFNDTIANNIAYGDLAGAPRADIEAAAADAYAREFIDQLPQG
FDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKG
RTTLVIAHRLSTIEKADLILVMDAGQIVERGTHTELLAQNGYYARLHAMGLDEPAPVGAV