Protein Info for Psyr_0527 in Pseudomonas syringae pv. syringae B728a

Annotation: type III effector HopAC1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2042 transmembrane" amino acids 170 to 193 (24 residues), see Phobius details PF20178: ToxA_N" amino acids 348 to 579 (232 residues), 76.2 bits, see alignment E=1.5e-25 amino acids 706 to 919 (214 residues), 39.1 bits, see alignment E=3.1e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0527)

Predicted SEED Role

"Aconitase A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7PC42 at UniProt or InterPro

Protein Sequence (2042 amino acids)

>Psyr_0527 type III effector HopAC1 (Pseudomonas syringae pv. syringae B728a)
MTQTPPSLDFNLSTPSPVPMTPSDTWAGASAALKRLDELRTLLARELDALPQAGEALLSA
LDGADVSERELQIFGLLQQIDDYWTDPGETGESRRDRLLPALQRSLHDEARVRIHERDFD
SGYLACLPDSPDQEGPALAYSTVRVQLHDDEQIEMAGVLVISQDQGRTLLMLPGLGISGF
ATQAMLVATLVQWLNTPTLRDALLSNAQRQHQERLTEILQDADLYLEPFTAADVQLQPVV
TTAPFIHAFDRLLNKQRNDIRYACEQPGTADRLKRQSLIQQAIDMPGLFGPAAMLELREL
TNRRRQYQRNLPEWMKIASAADLQTYALHLQRYDAAHTAMLSVLGSAASPERFAEMQLRT
RLANDLGHDLDPRDLTIDTRRTLPATSETYRVKLPLTELALYGLHPDDETAGSDFLDQTL
ITLDGQPLDAAYSDLNPAYLARVIDELDLRAVFGDFQRQAYQQEHNQQMLRALARVRLTT
LGWAAKMQGHIRPDDFAIVAALTSAATGTHDPALRVQQIRLNDRNVMARLLVCRKQDAQG
RTQRLIMFASEAPGQQYFKAFDTDTQLLHEMVGWTASPAMTAWLLDQVEVAARPELAAQL
TALREKPQPAKDFLQFIDHPDCETALRRFTDEQTRVLLSEQARHTPDWYLRASRAQRREL
LALERAINGALDNYQAQAHTGVQSFKDYVHQRASQQLGKLLGVPAGTVDPDQIVITSERE
TQTYTDMLLKGYNDSIDPLSTSAATDATFSGPPGIDLSALSPAAVAGSVRGQWLADEYIA
LIRNTLLNSENDGYAYRRQYSVMITQLQMKAAALRSLLKGHVEAAQYAWLTQSLDNAHLS
DPASRERYPLYPLQIHVDKPLIASGLTDVDQLVIPSPLLTHIETVQGCLVILPTQIRHAA
LLYTPQAPDGIEFRLFSDFVSSLNSEGMIDYYKDRCRIKARRTLSFFLRDMQKGNANKPP
VIPRAFIADVADTCFNRPLERRLRDVEETTTGRNDMLTKLIRVSVEIVATALTLPFPPAS
FAVGSLISLHDSGQALAALSAGDRERATNYMLSALLNGLGAGSDLLVGLKGLGGALHQLE
NSQHSTPVLRSFQRQPSLPRYEDLYPVELQEQVFLLGKPNVHGHAAIFQASHVASAPPLA
TGQFAAREIGGAWQPLLPLPPTAQRAPSGLRIDLAVDISLENVPRIAEGHAKGVHAINGK
YYIQLSDQAFEVQYDAYWQYWQIIDPANPFAFFGKQPVRLNDQGQWLLVERQRLRGGGLD
TPGTYRPLPEQASASSSSLNTLSDYEMPSGMRAHLDIVINKEVFDPTGAGLDVYFETYFT
EVRQTFTARREQLYQDAQAFFARFTPPPRPTLPAYGLPGSVDTLIKHIFSHSNGLVFSEA
PKSVASKRLLLLNMPLLAEQRVEVLYIEHLLTDKHLRKLARYRQLGKKSRSGSHELKYYL
QETNRGALNNASSEFDYYHLIKAAHRYGIEVRPLSSSISYPFLGHTVLSAADDPAAAMKM
SNFFGHRLINHDIEPASARRWVALLDQKLATTHDQVPGIAEMQGAVSVQVQDIPAGRPTR
IRQGAGEAHENTPSHCDFSIAFADPTLPARPLPPATALDNTLIRELGDPTAIAEGERWAG
EYGFVLDENHTWLRVEADDWSVDRSMTAIQQSLTDATYEMPPDTRTTLHRLANFEKKGLD
MEYFFEDIELDTVRNTFDLRRKNLQKDAASISAAQLPPRPTLPAIEPQTSTAGLLETLYR
HTEGLVIGESHSSVASKKLIIDNLPLLSQQNVKTLYMEHLLSDLHQADLDRFLETGQMSK
TLLHDLKTLDRGHHTDPNGVYTFEQLVIRARQQGLEIRAIDCASSYHLKGIAEDEPLIRQ
QMMNYFASRTIRRHQDVMGSHKWIALVGNSHSNTYQGVVPGIAELEGGIGLRVVDVAPGH
SRGITLDQGELVSGGIADDKVYIKADYRVEMEVPRPQPARLPSIEKRLSRPGMFLVQEGE
GNLQTIVHRARDTWIHRTPVLRNAEGKLYIERLRWPRIHLKPFDDIDALVAALEAMNLTR
AT