Protein Info for Psyr_0457 in Pseudomonas syringae pv. syringae B728a

Annotation: YceI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF04264: YceI" amino acids 26 to 187 (162 residues), 149.8 bits, see alignment E=3.9e-48

Best Hits

Swiss-Prot: 100% identical to Y448_PSE14: UPF0312 protein PSPPH_0448 (PSPPH_0448) from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)

KEGG orthology group: None (inferred from 100% identity to pst:PSPTO_5071)

Predicted SEED Role

"Protein yceI precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZ95 at UniProt or InterPro

Protein Sequence (192 amino acids)

>Psyr_0457 YceI (Pseudomonas syringae pv. syringae B728a)
MLKKSLAALALGTALLSAGQAMAADYVIDKEGQHAFVDFKISHLGYSFIHGTFKDWDGTF
SFDAAKPEASKINVELKTASLFTNHAERDKHISSKDFLDVAKYPEAKFVSTAVKSTGEKT
ADVTGDLTLHGVTKPIVIKATFNGEGKDPWGGYRAGFNGTSTLNLNDFGIKGPGPTSQTL
DLDISFEGVQKK