Protein Info for Psyr_0433 in Pseudomonas syringae pv. syringae B728a

Annotation: Glycosyl transferase, family 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 222 to 239 (18 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 5 to 126 (122 residues), 54.8 bits, see alignment E=5.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0433)

Predicted SEED Role

"FIG143263: Glycosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZB9 at UniProt or InterPro

Protein Sequence (244 amino acids)

>Psyr_0433 Glycosyl transferase, family 2 (Pseudomonas syringae pv. syringae B728a)
MHKPCVIIPVFDHELAVPTVVKAVRNAGLPCILVDDASSPACEAVLQQLAQGEAIYLLRL
PVNQGKGGAVMAGFREALRLGFSHALQVDADGQHDLSDIPLFLEQSRQHPDALICGYPQF
DESVPKGRLYARYLTHVWVWINTLSLHIRDSMCGFRLYPLAPVVALIDRVQIGRRMDFDS
EILVRLSWRGQPMRWLPTRVHYPQDGLSHFRLFHDNALISKMHAKLFFGMLVRLPMILWR
RWRP