Protein Info for Psyr_0365 in Pseudomonas syringae pv. syringae B728a

Annotation: protein of unknown function DUF886

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 PF05962: HutD" amino acids 9 to 180 (172 residues), 195.7 bits, see alignment E=3.9e-62

Best Hits

Swiss-Prot: 64% identical to YHUT_PSEPU: Uncharacterized 21.2 kDa protein in hutC 3'region from Pseudomonas putida

KEGG orthology group: K09975, hypothetical protein (inferred from 100% identity to psb:Psyr_0365)

Predicted SEED Role

"Conserved hypothetical protein (perhaps related to histidine degradation)" in subsystem Histidine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZI5 at UniProt or InterPro

Protein Sequence (198 amino acids)

>Psyr_0365 protein of unknown function DUF886 (Pseudomonas syringae pv. syringae B728a)
MSQTRILRAADYPRMPWKNGGGSTEEIARDAGQDLDGFGWRLSIADIETSGGFSVFAGYQ
RIITVLQGAGMTLDVDGLSSRPLLPSDPFAFSGDSQVNCTLMDGPIRDFNLIYAPHRYTA
RLHWIDVRHPQRLFSSASTLVLFSMAEQVAISVDSQPWEILGKHDCAQVDNAGGLLEVEL
QSPRASRCCLIELTATGQ