Protein Info for Psyr_0353 in Pseudomonas syringae pv. syringae B728a

Annotation: Acyl-CoA dehydrogenase, C-terminal

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 11 to 399 (389 residues), 620.7 bits, see alignment E=4.7e-191 PF02771: Acyl-CoA_dh_N" amino acids 30 to 122 (93 residues), 41.3 bits, see alignment E=3.6e-14 PF02770: Acyl-CoA_dh_M" amino acids 134 to 217 (84 residues), 34.6 bits, see alignment E=3.4e-12 PF00441: Acyl-CoA_dh_1" amino acids 243 to 373 (131 residues), 36.3 bits, see alignment E=1.3e-12 PF08028: Acyl-CoA_dh_2" amino acids 244 to 376 (133 residues), 67.8 bits, see alignment E=2.3e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0353)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZJ7 at UniProt or InterPro

Protein Sequence (401 amino acids)

>Psyr_0353 Acyl-CoA dehydrogenase, C-terminal (Pseudomonas syringae pv. syringae B728a)
MSSNPKARVNAALITSDAQALHIARELALQLKTDSAQRDRERRLPHAELDLFSQSGLWGI
SVPQAFGGAGVSNVTLAKVIQLISEADGSLGQIPQNHFYALEVLRVNGSPQQQARLYAEA
LAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFYATGALYAQRIPTSVIDDEGV
QQLVFVAHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVYVSANDVVPFQSAFQRPTTVGPL
AQILHAAIDTGIARAAFEDALTFVQTRTRPWIDSGIEKAVDDPLTLHSFGKLGIRLHAAE
ALLERAGEFLDVAQADSNAETVAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEH
GLDRHWRNARVHTLHDPVRWKFHAIGNYYLNETNPPLRGTI