Protein Info for Psyr_0256 in Pseudomonas syringae pv. syringae B728a

Annotation: Phenylacetic acid degradation-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 transmembrane" amino acids 49 to 63 (15 residues), see Phobius details PF14539: DUF4442" amino acids 10 to 124 (115 residues), 39.8 bits, see alignment E=7.5e-14 TIGR00369: uncharacterized domain 1" amino acids 13 to 125 (113 residues), 87.6 bits, see alignment E=3.1e-29 PF13622: 4HBT_3" amino acids 42 to 125 (84 residues), 39.3 bits, see alignment E=9.5e-14 PF03061: 4HBT" amino acids 43 to 117 (75 residues), 74.5 bits, see alignment E=1e-24

Best Hits

KEGG orthology group: K02614, phenylacetic acid degradation protein (inferred from 100% identity to psb:Psyr_0256)

Predicted SEED Role

"Uncharacterized protein, possibly involved in aromatic compounds catabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZU3 at UniProt or InterPro

Protein Sequence (127 amino acids)

>Psyr_0256 Phenylacetic acid degradation-related protein (Pseudomonas syringae pv. syringae B728a)
MDIPEDLTHSAYFKMLGCELRRLDEGVAEVALPLEAHLRNRGNVMHGGAIFSLVDIAMGL
ACSSVHGFDQRSVTIECKINYVRGVSEGEVLCIARVLHAGRRTLVVEAEVVQGDKLVAKA
QGTFAVI