Protein Info for Psyr_0189 in Pseudomonas syringae pv. syringae B728a

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 39 to 59 (21 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 202 to 223 (22 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 268 to 288 (21 residues), see Phobius details amino acids 299 to 317 (19 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 355 to 378 (24 residues), see Phobius details amino acids 393 to 413 (21 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 36 to 443 (408 residues), 475.9 bits, see alignment E=5.2e-147 PF00909: Ammonium_transp" amino acids 38 to 443 (406 residues), 400.1 bits, see alignment E=4.6e-124

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 99% identity to pst:PSPTO_0218)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500B0 at UniProt or InterPro

Protein Sequence (445 amino acids)

>Psyr_0189 ammonium transporter (Pseudomonas syringae pv. syringae B728a)
MTLRQFAGLGALLSLALPGLALAADPVAEPVLNSGDTAWMLTSTALVLFMTIPGLALFYG
GMVRSKNILSVMMQCFAITGLISILWVVYGYSIAFDTTGMEAGVVNFNSFFGGMGKAFLA
GITPASITGPAALFPEAVFVTFQMTFAIITPALIVGAFAERMKFSAMLVFMGIWFTLVYA
PIAHMVWGGVGGLLWDWGVLDFAGGTVVHINAGVAGLVACLVLGKRKGFPTTPMAPHNLG
YTLIGAAMLWVGWFGFNAGSAAAANGTAGMAMLVTQIATAAAALGWMFAEWLTHGKPSAL
GIASGVVAGLVAVTPAAGTVGPMGALIIGLAAGVICFFCATSLKRKLGYDDSLDAFGVHG
IGGIVGAILTGVFAAPALGGFGTVTDIGAQVWIQFKGVAFTVVYTAIVTFIILKVLDAVM
GLRVTDEEESVGLDLAQHNERGYNL