Protein Info for Psyr_0098 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function DUF87

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 PF01935: DUF87" amino acids 133 to 432 (300 residues), 117.5 bits, see alignment E=2e-37 PF10412: TrwB_AAD_bind" amino acids 151 to 208 (58 residues), 26.3 bits, see alignment 7e-10 PF05872: HerA_C" amino acids 406 to 528 (123 residues), 27.2 bits, see alignment E=3.2e-10

Best Hits

KEGG orthology group: K06915, (no description) (inferred from 100% identity to psb:Psyr_0098)

Predicted SEED Role

"Bipolar DNA helicase HerA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500K0 at UniProt or InterPro

Protein Sequence (623 amino acids)

>Psyr_0098 Protein of unknown function DUF87 (Pseudomonas syringae pv. syringae B728a)
MASKETYLGDVQDVNGTAVSISLSKQSLTGFIYIDGQGYRVGQIGSFVRIPIGFSDLFGI
VSQVGASAVPENKNIIKDQSNRWMRIQLVGEGQRNGSFQRGLSQYPTIGDEVHLVSEKEL
KTIYGRPDRPYFVKLGHISNAESIPALIDINKLVTRHSAIVGTTGSGKSTTVASIMNALS
DTEKYPSSRIIMLDLHGEYGSALKDKADIFKINSFKLSKLAESELQIPFWALNFDELCEI
SFGEFSNEKEKNVVMERVHKLKAESIAKYPRTGASLDSVSVDSPIPFSIHHLWYDLFIET
FATYYKGRPGKPMDNLAFELDPAGNELRGNPAAGIPPIFKNIVTEANEEKINYLPGSLNI
GKNVLLLGTKLRIPRYDFIFRPGDWMPEADGSVVTDLDKLLESWIGRKSISILDLSGVPP
DILQTTIGAVLRILYEALFWARNLSQGGRHRPLLIVMEEAHIYLNDSFKGMASKIVQRIV
KEGRKYGIGAMIVSQRPSEIDPTILSQCGTFFALRLTNSTDRAHITSALSDNLDGLTSML
PILRTGEAIILGEAVKLPMRTSILAPPKNRRPDSQDPIVYDEFPFDESLSPGGWGIKMEG
SPNYEELVETWRAQNPRIDKIKP