Protein Info for Psyr_0049 in Pseudomonas syringae pv. syringae B728a

Annotation: Cytochrome c, class I:Iron permease FTR1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 632 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 374 to 399 (26 residues), see Phobius details amino acids 411 to 433 (23 residues), see Phobius details amino acids 445 to 462 (18 residues), see Phobius details amino acids 477 to 498 (22 residues), see Phobius details amino acids 521 to 541 (21 residues), see Phobius details amino acids 549 to 570 (22 residues), see Phobius details amino acids 599 to 618 (20 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 132 to 215 (84 residues), 42.3 bits, see alignment E=1.2e-14 PF00034: Cytochrom_C" amino acids 134 to 217 (84 residues), 46.1 bits, see alignment E=1.6e-15 PF03239: FTR1" amino acids 378 to 578 (201 residues), 73 bits, see alignment E=4.1e-24

Best Hits

KEGG orthology group: K07243, high-affinity iron transporter (inferred from 100% identity to psb:Psyr_0049)

Predicted SEED Role

"Cytochrome c family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500P9 at UniProt or InterPro

Protein Sequence (632 amino acids)

>Psyr_0049 Cytochrome c, class I:Iron permease FTR1 (Pseudomonas syringae pv. syringae B728a)
MPVHSRFLAWLLLPLLALGSCVALADPVEGAAQALHLLDYLGADYPATVADGKVVDTVKY
QQQVDNLAALQGLVVALPQRAGRDALEQAVTQLKSAVAGRQDAAQVTRQARQLSARLALA
YEVSQAPAITPDPARGAPLYAQHCSVCHGDSGAGDGPAGIGLEPPPSNLRDTARLDRLSL
YDLYNATGLGIAGTDMPAFADQLDDRQRWDVATYIASFSAQPVAQPAKTFNLADLARQTP
AEIQAAEGPDATATFRAQRAQPPQVQRGPAQLLDYTSVTLDKSLAAYKAGDREQAYDLSV
AAYLEGFELVESSLDNVDANVRKDTEKSLMAYRQSLQDSMPLPQVAQKLEAAKGKLKESA
DLLGSDGLSLSLSYISGLLILLREGLEAILVLAAILAFLRNTGQQSAVRSVNIGWGLALL
AGLATWALAAYVIDVSGAQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYVKSSLV
GGGGRFGFAVLAFFSVYRELFEVILFYETLWLQAGPAGHDAVLAGGATALVLLVGLAWII
LRGSAKLPLSLFFGINAALLCALSVVFAGHGVKALQEAGIFGTRPVPFFEFDWLGIHADL
YSLGAQAIALIAIAVLYGRSRLAEKRRLQTAD