Protein Info for Pf6N2E2_956 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG01210404: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 62 to 86 (25 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details TIGR03745: integrating conjugative element membrane protein, PFL_4702 family" amino acids 21 to 123 (103 residues), 144.5 bits, see alignment E=4.5e-47 PF11190: DUF2976" amino acids 36 to 122 (87 residues), 93.7 bits, see alignment E=2.7e-31

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfo:Pfl01_3017)

Predicted SEED Role

"FIG01210404: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZV44 at UniProt or InterPro

Protein Sequence (123 amino acids)

>Pf6N2E2_956 FIG01210404: hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MLKCLVPLKNNLRDRASQRMIGLLLVLGPSLAFAELPTMEAPSRGEGSGLIETIKNYAYD
GGILLGLLIALLAFLGVAWHSLTVYADVQNQRKTWKDLGAVVGIGALLVVIIIWFLTKAA
AIL