Protein Info for Pf6N2E2_952 in Pseudomonas fluorescens FW300-N2E2

Annotation: putative exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR03752: integrating conjugative element protein, PFL_4705 family" amino acids 2 to 494 (493 residues), 624.3 bits, see alignment E=9.5e-192

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfo:Pfl01_3021)

Predicted SEED Role

"putative exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YXS3 at UniProt or InterPro

Protein Sequence (504 amino acids)

>Pf6N2E2_952 putative exported protein (Pseudomonas fluorescens FW300-N2E2)
MKANALLKWLVPAALLAVVVIILKSWVAGNTPSPEHPVDQGNIQLSAEQAKSLGIAGDTP
RDTVATLVGQVKAMRSDMLGLKKHNDSLQTENNRLRERENSVDSRIQTALGSVTQQVDEG
RRQANEARLKAEQDSRQARGLLTQLQEQLSGLTGKSKDMPIGLGLEPGDGAQFEAQHSAI
DALQWIEPSDAPPTDAREKTKTSSTLSLPTAFNSLDGLKDNAIDRSQKQLRAVTKGERDL
TRSADRTEGAKPVYTIPENATLMGSVAMTALIGRVPVDGTVNDPYPFKVLVGPENLTANG
IDLPDVAGAVMSGTASGDWTLSCVRGQVESITFVFTDGTIRTVPQPKAVASRNASTAQSS
STDKIRGGLGYLSDPYGIPCIAGERRSNAQQYLGSQSLITATGAGVAALLGDERNNSSVI
SSGGSKLGVTSSSGNSALNAILSGGVSDIREWVNKLYGEAFAAVYVPPAAQVALHLDQEI
TIDYEPKGRSVRHEKDHASLLDLD