Protein Info for Pf6N2E2_908 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG00464231: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1171 PF04851: ResIII" amino acids 303 to 435 (133 residues), 38.9 bits, see alignment E=1.3e-13 PF00270: DEAD" amino acids 308 to 469 (162 residues), 87 bits, see alignment E=1.9e-28 PF00271: Helicase_C" amino acids 627 to 702 (76 residues), 26 bits, see alignment 1.4e-09

Best Hits

KEGG orthology group: None (inferred from 76% identity to rpc:RPC_3053)

Predicted SEED Role

"FIG00464231: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZS88 at UniProt or InterPro

Protein Sequence (1171 amino acids)

>Pf6N2E2_908 FIG00464231: hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MATSRDAIIAAIEAASAPGFRGRLIAQGQARAIIWRDGILPAGAPAFGTQLSFELHSYAY
GLLGLGLRLLEMDGDPIQARLAFVQAATALEAVMAKGDRRESDRDFHFVMAAASYHLAHL
SARAYSLLAIVANEANFSPLEQALALLMRRDINGLQTLIYGYRLSGRGSDARITALIQER
MAQGAPEIDRDGHDYLFEGLDLALTDNFFGALATYMLALDRSEQELVDRAVARLRENLAV
CAEFNLLPQWWAHRIAIHLLSDLWSNTFHKKLPLISAGGAAPGWAELRKLFIASLSRRPK
AEIDLWPSQIEAAARAIDQTDNLVVSLPTSAGKTRIAELCILRCLAAGKRVVFITPLRAL
SAQTEATLQRTFGPLGKTISALYGSVGVSNLDEDAIRGRNIVVATPEKIDFALRNDPALL
NDVGLLVFDEGHMIGPGEREVRYEVQIQRLLRRPDAEQRRIVCLSAILPDGQQLEDFSAW
LRRDQPGSAIKGDWRPTRLRFGEVVWSSPAARLNLRVGDERPFVPRYMTGSVPQFFVPPK
RPRTRLFPDDQQELSLATAWRLVEDGQTVLIYCPERRSVEPFAKIIVDLHERGALRSLLT
VDPAVLQTAIALGTEWLGVDSDILKCLRLGVALHHGALPTAYRKEVEHLLRRGSLRVTIS
SPTLAQGLNLSATAIVMHSLYRHGEKIKVSEFKNIIGRAGRAYIDVEGLVLFPIFEDRRN
QKHNEWVELIENKGARDMESGLVMLLSSLLLRMHKRIGGDLNQLMEYVVNNAVAWTFPVV
VGEQLAKEDRARKDWERNIATFDTAILGLIGDSDVPDEGIEAALDAILQSSLWQRRLMRL
DEPARAIMKSALLARSRYIWARSTAATRRGYYLAGLGLEAGQSLDAVAVEANALLIEANG
ALLIGDSETAIRAIAGIAERVFTFYPFAPDPFPANWREILRSWLLGESLSALIAGQEGNA
LQFIEGGLVYRLPWAMEALRVRAAANGDVVGDFGLALDDYELGLVMPAVETGTMNRSASI
LMQAGFNSRLAAIKAVNDTGATFTTAYELRVWLQSPHVVASSGQHDWPTPETRALWLSFT
EESVPAHSRTWAERYYTANVVWHAAPPPPNSVLSLHIWEGQPHVLSAEGLTLGVLSHLLN
PARGGVLRATVIPQSGQLALSYLGPDDLWLV