Protein Info for Pf6N2E2_9 in Pseudomonas fluorescens FW300-N2E2

Annotation: Pyoverdine sidechain non-ribosomal peptide synthetase PvdD @ Siderophore biosynthesis non-ribosomal peptide synthetase modules

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1381 PF00668: Condensation" amino acids 30 to 474 (445 residues), 341.2 bits, see alignment E=2.3e-105 PF00501: AMP-binding" amino acids 497 to 852 (356 residues), 317.9 bits, see alignment E=2.1e-98 TIGR01733: amino acid adenylation domain" amino acids 517 to 927 (411 residues), 452.5 bits, see alignment E=6.4e-140 PF13193: AMP-binding_C" amino acids 911 to 986 (76 residues), 37.7 bits, see alignment 8.1e-13 PF00550: PP-binding" amino acids 1014 to 1076 (63 residues), 53 bits, see alignment 8.1e-18 PF00975: Thioesterase" amino acids 1100 to 1204 (105 residues), 98.6 bits, see alignment 1.6e-31

Best Hits

KEGG orthology group: None (inferred from 87% identity to pba:PSEBR_a3916)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YGI1 at UniProt or InterPro

Protein Sequence (1381 amino acids)

>Pf6N2E2_9 Pyoverdine sidechain non-ribosomal peptide synthetase PvdD @ Siderophore biosynthesis non-ribosomal peptide synthetase modules (Pseudomonas fluorescens FW300-N2E2)
MNELLDDDLLTLLLEDVARDVQTRSGSRLDRAPLSFAQQRLWLEHQRDPTRSAYNLPRAL
RLSGELDAEALEQALNRVIDRHDILRTAFNDIDGAPVQVVERDACLVLHREDLGALAPPE
RATALSQRIKLHAGQPFDLSRAPLMRATLLRLDSDEHVLLLNMHHIVSDAWSNTILMQDM
TQAYARALMGDPTPLPSLPMQYADYATRQRGEYLQSMACQHSGEYWSRYLGHDLPTLELP
QDFPRATGQQHMAGRVHLSLAPAMARALDTFCQRQGLTPFVVALGAWQMLLGRYSNQDDF
TVGVPNANRNSHESQDLVGFFVSSQVYRTRIDSSRSGQDYLRDLRAQALAALEHADYPLE
LILDQLQRPGAQGLFQVLFNWRTGSPALPISPRGELALEFLDTGDSQAKFDLSLDVDYSQ
QQIVATFEYSRDLYRTDTIERMAEHWQNLLWALIETPERALGELHLLGADEHQQTLHDWN
RQPTQLPRERCLHQVIESHAATTGDAIALTFEGQHMSYAELNRQANSLAHRLIEQGVGPD
VLVGIAAERSPQMLIGLLATLKAGGAYVPLDPAYPADRLAYMIEDSGVTQILTQTHLRES
LALPAGIGCLLLDSVDADSAYPEHNPDVPIHPDNLAYVIYTSGSTGKPKGALLAHHNVSR
LFQATEHWFSFDHQDVWCLFHSYAFDFSVWEIFGALLHGGRLVIVPHAVSRSPQEFYALL
CQENVTVLNQTPSAFKSLLQVACEAHQPLGHRLRQVIFGGEAIDVQSLRPWFERFGDQSP
QLINMYGITETTVHVTWRPLSIDDLHSETASPIGQPIVDLSWYLLDAHLNPVPKGCIGEL
YVGRAGLARGYHQRADLTASRFIPDPFDPLPGSRLYRTGDLARYRTDGSIEYIGRLDHQV
KIRGFRIELGEIQARLQTLPEVQDCVVLTHDGPTGLQLVAYVIATQPPSAELREGLLSAL
KAQLPDYMVPSHLLFIDRFPLNANGKLDRKVLPEPDASLRHSNYVAPRTQLEEALAQLWQ
QSLKVERVGVNDSFFELGGHSILAIELIANLKARLNITVRLQELLAHPSIAELALFISQK
HREQTPCLVELNNAPASAPQLFCLHPSGGIVFCYQPLARKLQHRARTFGIMHRGFSEPHA
SPEAWREMIADYSQEIVNAQPQGPYYLMGWSLGGTIALDIAATLESQGHTVSFLGLVDST
IPEHLYPATLSRHRHLPGDGQTDPASQDLLGAIEYFDLLFPTLTDRTAAYRQEHPDSSVQ
AFHEWAASQIEPGRGDLLSIVQSVKDEVMNAQAFSVHDRLLEAFDAFTFKPVRVRPSCWW
TQAEKTPEELAFCESLIKGYSLTGELHCSVYSPLRHRSMIFDETLLDSLIEAFLSSTTHD
K