Protein Info for Pf6N2E2_861 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF00126: HTH_1" amino acids 30 to 88 (59 residues), 59.1 bits, see alignment E=3.3e-20 PF03466: LysR_substrate" amino acids 114 to 319 (206 residues), 144.2 bits, see alignment E=3.7e-46

Best Hits

KEGG orthology group: None (inferred from 59% identity to ppg:PputGB1_2949)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZTV9 at UniProt or InterPro

Protein Sequence (340 amino acids)

>Pf6N2E2_861 Transcriptional regulator, LysR family (Pseudomonas fluorescens FW300-N2E2)
MLFRYRQTRPYPMENDQITFASVSRWLKIKHLVLVNSLAKTRNMHTTAEHMNVTQPAISK
LLRDLEVLLGFPLFERQTRSLVLTELGEFVARYARITLEDTESFVDQVNKLRKGGHGHLK
VGTIFAATSVVLPEAIASIKRERPLLSIEVIEQTSNHLLEMLEQKKLDLIIARFTDEDCQ
PFEFTSLGPEPFCLVANSTHPLCRLEEVPTEALSEWPWVMYPFNTPIRQRMERAFRTFKI
APPTNTVETISMQTFLQLLQSGPMLAMLPESMVQSQLQNGQLQILNTPFKVESQDYGVIT
RKDEPLSEPTRTFIATLLAFAKQRQTATEKRDRSQFRKSR