Protein Info for Pf6N2E2_83 in Pseudomonas fluorescens FW300-N2E2

Annotation: transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 PF12833: HTH_18" amino acids 35 to 113 (79 residues), 75.4 bits, see alignment E=7.4e-25 PF00165: HTH_AraC" amino acids 80 to 113 (34 residues), 33.7 bits, see alignment 6.2e-12 PF06445: GyrI-like" amino acids 135 to 288 (154 residues), 137 bits, see alignment E=1.3e-43 PF14526: Cass2" amino acids 138 to 287 (150 residues), 57.2 bits, see alignment E=4.9e-19

Best Hits

KEGG orthology group: K13652, AraC family transcriptional regulator (inferred from 97% identity to pba:PSEBR_a3790)

Predicted SEED Role

"transcriptional regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YIL0 at UniProt or InterPro

Protein Sequence (289 amino acids)

>Pf6N2E2_83 transcriptional regulator, AraC family (Pseudomonas fluorescens FW300-N2E2)
VSDMAPNFAYTKRFNAVLAYINENLEDDLSVNTLSHVANFSAFHFHRQFTAFVGVPVSRY
VQLMRLRRAAHRLAATADHSVLEAALGAGFESPEAFCRAFRRAFGMTPSAFRKEPNWQVW
NAVFAIPHFSRTIIMQIRIVQFPEVRVAAFEHCGPAGLVNESVRKFIEWRKQSGQSPVAS
SRSFGIPYGNPDTTPAQAFRFAICGEIHEAVAPNEFGVREIVIPGGRCVVVRHEGSPDHI
GETIYPIYRDWLPGSGEELRDQPLFFHYLSIYPETPQDHWQTDVYVPLQ