Protein Info for Pf6N2E2_779 in Pseudomonas fluorescens FW300-N2E2

Annotation: transporter, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 transmembrane" amino acids 18 to 40 (23 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 112 to 138 (27 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 218 to 244 (27 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 276 to 298 (23 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details amino acids 368 to 388 (21 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 284 (264 residues), 62.4 bits, see alignment E=1.9e-21

Best Hits

Swiss-Prot: 54% identical to Y3873_PSEAB: Uncharacterized MFS-type transporter PA14_38730 (PA14_38730) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a3101)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZRZ9 at UniProt or InterPro

Protein Sequence (397 amino acids)

>Pf6N2E2_779 transporter, putative (Pseudomonas fluorescens FW300-N2E2)
MPTPSSAPSSLSITLQIVSIVFYTFIAFLCIGLPIAVLPGYVHEQLGFSAVVAGLTIGSQ
YLATLLSRPMAGRLSDSVGTKRAIVYGLSGIVLSGVLTLLSTLLQSFPLPSLLILIAGRL
LLGVAQGLIGVGTISWCMGQVGVEHTARSISWNGIASYGAIAIGAPLGVVMVGELGFASL
GVALSLLAGAALLMIRNKPSVPVIRGERLPFWAVFGRIAPYGASLSLASIGYGTLTTFIT
LFYVSRGWTGAAWCLTVFGICFILARLLFISSIARFGGFSSAIVCMSIETLGLVLLWLAP
STAFALIGAGLAGFGLSLVYPALGVEAIKQVPNTSRGAGLSAYAVFFDLALAIAGPLMGA
VALNLGYSSIFFCAALLSVTGLGLTLLLRRRAINAPY