Protein Info for Pf6N2E2_711 in Pseudomonas fluorescens FW300-N2E2

Annotation: Nitric oxide reductase activation protein NorD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 PF00092: VWA" amino acids 462 to 573 (112 residues), 24.7 bits, see alignment E=1.3e-09

Best Hits

KEGG orthology group: K02448, nitric oxide reductase NorD protein (inferred from 99% identity to pba:PSEBR_a3166)

Predicted SEED Role

"Nitric oxide reductase activation protein NorD" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZUM6 at UniProt or InterPro

Protein Sequence (612 amino acids)

>Pf6N2E2_711 Nitric oxide reductase activation protein NorD (Pseudomonas fluorescens FW300-N2E2)
MAFTLELEEWVGSVWHRFITRRASADFPEARVELVPRQRSLQVLFRATGGAPHLGVEAVS
DRDLLLRRNLLQQIAGTCKQVPLACCDGDNLRLPASLATFPDVGLNEELYRWLALLAAQS
GPMKHWGRDNQRWTLAVLKRYPALRPRYRRLVEAHLSLRPDPATLNPAEAALERALCQAL
REPGSVEHFPRSERAAWPLPLWLYPPQHLANPQAANLEESEQYLATPPGEQQGGRKRAER
IDDTTRDGGLLIVRLENLFSWTEHVDLDRWADDSEDPDAARVAEDLDQLTLSRTRIRKGG
GLKLHLDLPPADVDDLPLGAGILLPEWDYRKQRLQDDFVSLQTFTPRDCQPQPLPARLRS
SAQRLRRQFEHLRNDRQWLRQQTQGSELDLQAWLDFHVERQHGQCSERGLFMDQRQTRRD
LACLLLADLSMSTDAHLNDEHRVIDVIRDSLLLFGETLSVLGDDFALYGFSSLRRQQVRM
HELKAFNQRYDDHTRGRIQGLKPGYYTRMGAAIRQATQRLAGCKRRRKLLLLLSDGKPND
LDLYEGRYGVEDTRQAVLEARRQGLTPFCITIDREAGDYLPYMFGANGYTLIRQPEQLPL
RLPQLYRQLTQD