Protein Info for Pf6N2E2_69 in Pseudomonas fluorescens FW300-N2E2

Annotation: Probable type IV pilus assembly FimV-related transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 418 to 438 (21 residues), see Phobius details amino acids 604 to 620 (17 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 169 to 240 (72 residues), 86 bits, see alignment E=1.2e-28 TIGR03504: FimV C-terminal domain" amino acids 820 to 863 (44 residues), 71.4 bits, see alignment 4.7e-24

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 98% identity to pba:PSEBR_a3862)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YI81 at UniProt or InterPro

Protein Sequence (864 amino acids)

>Pf6N2E2_69 Probable type IV pilus assembly FimV-related transmembrane protein (Pseudomonas fluorescens FW300-N2E2)
MVQVRKLVLAIAAASALSSGMAQALGLGELTLKSTPNQPLVAEIELLDVQQLTAAEVVPS
LASPDDFAKAGVDRQAFLNDLSFTPVINANGKSILRVTSSRPLSEPMVKFLVQVMWPNGR
LLRDYSVLLDPSKFSPQAADAARAKPPQVVATPVTGATKPSQYTTTPRDTLWEIAAKVRN
GGSVQQTMLAIQALNPNAFINGNINLLKTGQVLRLPDPVQSTALPQPQAIAEVAAQNAAW
RSGRRGVAGAGKQQLDATKRGRGEGAPAQAAGRDNLSLVSADSAKAGGKGKGAAGDAQAL
SNKLAVTQESLDSARRDNEELKSRMADLQSQLDKLQRLIELKNNQLAKMQAEGAAVPPAG
EAPPAMSAELTPAPAAQAPTAAPAPEAAPEATPPAAPVEPTPAASNEQKYNDLLTNPILL
GLIGGGAVLLLLLLLLLARRRKAQQEAEKHLRMARALEEEADFSPELDLPPSSFEGIDVP
PPSVKLEPKPAPAPAPVPKPAPVVAPVVVTPPIAAPLVAPAAERSDDVLPQAQSHIDRGR
LNQAADLLEQGIKAEPQRSDLRLKLMEVYGQQGDRDAFVAQERQLVANGENFAQVEQLKS
RFPAMVVATAAGLAAATVAAELDAQYVKDLLEDKTPTDEELDNAFDLSLDDLETTPVAPT
PEPVAELDAFPEDDDLSFESVLKQQTEANESLDDLSEFDLDLGAEAPTPVAALDDEDFLL
DLDDDLKGLDLPATETPALADIPADDLELPADFDLSLSDEMDAHDAPKDAFESELDDVNA
ELDRLSDSLGQPTFTAEDALVGAEDEPDFDFLSGTDEVATKLDLAQAYIDMGDNDGARDI
LGEVLSEGDATQKSEAQEMLSRLA