Protein Info for Pf6N2E2_682 in Pseudomonas fluorescens FW300-N2E2

Annotation: Predicted regulator PutR for proline utilization, GntR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 PF00392: GntR" amino acids 19 to 79 (61 residues), 57 bits, see alignment E=1.9e-19 PF13412: HTH_24" amino acids 36 to 69 (34 residues), 23.9 bits, see alignment 3.6e-09 PF07729: FCD" amino acids 89 to 209 (121 residues), 94.6 bits, see alignment E=9.7e-31

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a3195)

Predicted SEED Role

"Predicted regulator PutR for proline utilization, GntR family" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZS46 at UniProt or InterPro

Protein Sequence (223 amino acids)

>Pf6N2E2_682 Predicted regulator PutR for proline utilization, GntR family (Pseudomonas fluorescens FW300-N2E2)
VTLSKFNLPDLGNTPSTSEIITRHLRDAIVAGHFAEDEPIRQDDIARQFNVSKIPVREAL
KRLEAEGLVMFQRNRGAMVTRISEAELAQMFEVRMLLEDKVLRLAIPNMTEATFARAESI
CREFIGEDDVGRWAELNWQLHACLYEPAQRPFMVSLIRSVHDKLERYLRMQMSLSAGKER
ADHEHREIIKACRAGDVERAVMLLDEHIAGVCETLFKFLPSSH