Protein Info for Pf6N2E2_659 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transcriptional regulatory protein ompR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 PF00072: Response_reg" amino acids 7 to 118 (112 residues), 108.3 bits, see alignment E=2.4e-35 PF00486: Trans_reg_C" amino acids 160 to 235 (76 residues), 72.2 bits, see alignment E=3e-24

Best Hits

Swiss-Prot: 40% identical to VIRG_RHIRD: Regulatory protein VirG (virG) from Rhizobium radiobacter

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a3218)

Predicted SEED Role

"Transcriptional regulatory protein ompR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X0L6 at UniProt or InterPro

Protein Sequence (246 amino acids)

>Pf6N2E2_659 Transcriptional regulatory protein ompR (Pseudomonas fluorescens FW300-N2E2)
MDHVDHVLIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRAFLETTPVDLIVLDIMMPG
DDGLVLCRELRAGKHKATPVLMLTARNDETDRIIGLEMGADDYLVKPFAARELLARINAV
LRRTRMLPPNLVVTESGRLLAFGRWRLDTTARHLLDTDGTMVALSGAEYRLLRVFLDHPQ
RVLNRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDAREPAYIKTVRSEGYVFSLPVE
ILEASV