Protein Info for Pf6N2E2_658 in Pseudomonas fluorescens FW300-N2E2

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 154 to 174 (21 residues), see Phobius details PF00672: HAMP" amino acids 174 to 222 (49 residues), 28.5 bits, see alignment 2.3e-10 PF02518: HATPase_c" amino acids 328 to 433 (106 residues), 84.7 bits, see alignment E=9.6e-28

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a3219)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZUI7 at UniProt or InterPro

Protein Sequence (436 amino acids)

>Pf6N2E2_658 sensor histidine kinase (Pseudomonas fluorescens FW300-N2E2)
MSLSLRWPRTLASRLSLIFLIGLILAQGLSFGVQYYERYQSAKSTMLGNLETDVSTSVAI
LDRLPAAERQAWLPKLARRNYSYLLDEGQPGQPMDLADAPISVSSIQEAIGQAYGLTFKQ
IPGPKMHYQAHLRLGDGNPLTIDVRPAMTPLSPWLPMVLLGQLALLIGCTWLAVRLAVGP
LTRLAEAVETLDPNAHGVRLDEKGPTEVVHAAKAFNAMQDRIAAYLKERMQLLAAISHDL
QTPITRMKLRAEFMDEGIERDKLWSDLSEMEHLVREGVAYARSIHGATEASCRISLDAFL
DSLAFDYQDTGKDVQLTGKNAAVIDTRPHALRRVLVNLVDNALKFGGAAQIQVQPADNGQ
LAIQVLDRGPGISEQELAEVLKPFYRVESSRNRETGGTGLGLAIAQQLAIAMGGSLTLSN
RDGGGLCAELRLAFAS