Protein Info for Pf6N2E2_618 in Pseudomonas fluorescens FW300-N2E2

Annotation: Exonuclease SbcC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1213 transmembrane" amino acids 1126 to 1143 (18 residues), see Phobius details PF13555: AAA_29" amino acids 27 to 62 (36 residues), 28.9 bits, see alignment (E = 1.2e-10) PF13558: SbcC_Walker_B" amino acids 1115 to 1172 (58 residues), 37.5 bits, see alignment 3.6e-13

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 94% identity to pba:PSEBR_a3259)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZTD3 at UniProt or InterPro

Protein Sequence (1213 amino acids)

>Pf6N2E2_618 Exonuclease SbcC (Pseudomonas fluorescens FW300-N2E2)
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNTGRDAKVPDVDGEIATGDPRTLLRRGTGDGYAEVDFRGIDGRRYRARWEANRAREKA
GGKLQASRQSLRDLDNDQLLASQKGEYKTQLETALGLNFEQFTRAVLLAQSEFSAFLKAD
DNERSELLEKLTDTALYTRLGRRAFDKAKHAKETHKQLQDQATGVTPLAPEARAELDQRF
TEAQLQLKAQQAQLKQLEQQHTWLRDLGLLQDEHASAAEQLQQAQADWNALADERLKLVR
LEQLAPQRHQFIRQTELNRQLEPLTAQIQQLTQQQIDLHAQQAELEKALDDAQQALASAR
QQSIDSAPLLRQAFGEQSTLARLAQDANLSAERQEQAQQACTEGQRTIDTLLEQQRQVAE
RLQRIADALEQSTHLAPLSDAWNAYRDRLQQLMLIGNRLNQGQAELATLEQSATRAAEEL
ATRRQDLEVLYKEAGAEPQAVAEQIQLLGTLLQDNRKQLRAFEDLTRLWASQQELDKRGA
ELEQRQQRALQERDRLVREGGEAKAELTIAEQTLTVTRELLERQRLARSESVEQLRAQLQ
DEQPCPVCGSVEHPYHQPEALLENLGRFDETEEANARKAVDLLNEKVIDLRTQYSGVIAQ
LKELKQQQEQLASQQQSLAPSLEAHPLSAQLLAQDSNKRDTWLAQQNSQLHQHISQDEQR
QTALLTLQQDAARLAQQLRDAETASQQAAQQLSNQQQELARDRQRLDDELSHFSALLPAD
TLQALRTEPAATFMQLDQQIAQRLEQLEQQRDELSEQLQRQQTLEKEQDRQQTRLQQLEA
VRLQFSALSEQQQACQQQLTQLLGEHTSAEQWQQQLDQRLEQTRDAEATANQQLQQLRND
LVQLAAELKARQEQARSLDLERQALAAGIAQWRTSHPELDDAALEALLGLDDQHVSQLRQ
RLLNSEKAIEQARVLLTEREQRLQNHQAQHNGNLLPEQLAEALTELQGQFAASEQRCAEL
RAEQAEDQRRQNANQALAQQIEQAYIEYQRWARLDALIGSATGDRFRKLAQAYNLDLLVH
HANAQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSTVEVK